# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.01504		
2bj7A	138	0.02677	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.1968	a.43.1.3	17455
2gpeA	52	0.6169		
1p94A	76	0.7109	a.43.1.3	94380
2bsqE	77	5.319	a.43.1.8	129102
2k29A	53	7.777		
2q2kA	70	9.460		
2an7A	83	12.59		
1yoeA	322	16.43		
2c5aA	379	17.21	c.2.1.2	129894
1ml8A	134	18.35	d.227.1.2	85013
2ba3A	51	21.63		
2e8eA	132	25.18		
2d7eA	105	25.45		
1uz3A	102	30.58		
1vdlA	80	31.35	a.5.2.1	108528
2ds2B	72	31.41		
3c8cA	240	38.00		
1d2fA	390	39.83	c.67.1.3	34411
1oc2A	348	44.21	c.2.1.2	92765
2jgpA	520	46.64		
3beeA	93	47.47		
1gqnA	252	52.40	c.1.10.1	90514
1x93A	55	55.81		
2hujA	140	56.28	a.24.26.1	136777
2rcyA	262	57.45		
2masA	314	67.25	c.70.1.1	34810
2q4fA	149	67.36	a.24.10.2	139847
1sur	215	67.49		
2vebA	195	68.10		
2vqeT	106	72.85		
1n69A	81	73.58	a.64.1.3	80118
1a53	247	75.18		
2yx0A	342	75.82		
2z1mA	345	76.98		
1ekjA	221	77.59	c.53.2.1	33364
2e2eA	177	77.79		
2v9dA	343	78.39		
1k3xA	262	78.98	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1fjgT	106	83.86	a.7.6.1	16338
1svmA	377	88.69	c.37.1.20	112126