# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.003150		
2bj7A	138	0.004019	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.07145	a.43.1.3	17455
2gpeA	52	0.2150		
1p94A	76	0.3976	a.43.1.3	94380
2an7A	83	2.816		
2q2kA	70	4.952		
2k29A	53	5.884		
2d7eA	105	10.59		
1yoeA	322	10.92		
1x93A	55	12.55		
3cihA	739	13.01		
2bsqE	77	13.97	a.43.1.8	129102
1vdlA	80	17.66	a.5.2.1	108528
2masA	314	20.49	c.70.1.1	34810
1uz3A	102	20.55		
1ml8A	134	23.09	d.227.1.2	85013
2vebA	195	23.47		
1ic8A	194	25.58	a.4.1.1,a.35.1.1	76740,76741
2ba3A	51	27.21		
2c5aA	379	28.19	c.2.1.2	129894
2ov6A	101	29.07		
3c8cA	240	31.46		
1f60B	94	37.43	d.58.12.1	39307
1n69A	81	43.01	a.64.1.3	80118
1d2fA	390	44.25	c.67.1.3	34411
2rcyA	262	45.98		
1gaiA	472	46.78	a.102.1.1	18819
1k3xA	262	47.32	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2ns5A	85	49.05		
1m12A	84	49.68	a.64.1.1	84745
2jgpA	520	51.03		
2qp2A	511	54.95		
2ds2B	72	58.20		
2gs4A	166	60.71	a.25.1.4	135575
2jobA	102	69.87		
2z1mA	345	70.76		
1q8fA	313	72.42	c.70.1.1	96203
2ae5B	528	72.82		
3beeA	93	73.38		
2vqeT	106	74.35		
2q4fA	149	75.09	a.24.10.2	139847
1svmA	377	75.98	c.37.1.20	112126
1ceo	343	77.87		
2e8eA	132	78.34		
1sur	215	78.44		
2v9dA	343	78.87		
1gqnA	252	82.98	c.1.10.1	90514
1a53	247	86.35		
2c8eE	211	87.43		
2pgsA	451	89.56