# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.003835	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.006055		
2cpgA	45	0.05879	a.43.1.3	17455
2gpeA	52	0.1786		
1p94A	76	0.2155	a.43.1.3	94380
2an7A	83	2.859		
2k29A	53	3.841		
2q2kA	70	3.846		
1x93A	55	7.545		
2bsqE	77	8.734	a.43.1.8	129102
1yoeA	322	11.35		
2d7eA	105	14.82		
2ba3A	51	19.11		
3cihA	739	21.84		
1vdlA	80	23.13	a.5.2.1	108528
2vebA	195	24.44		
3c8cA	240	30.82		
1uz3A	102	32.13		
2masA	314	32.55	c.70.1.1	34810
1ml8A	134	32.66	d.227.1.2	85013
2jgpA	520	36.90		
2ds2B	72	38.50		
1n69A	81	40.31	a.64.1.3	80118
1l5aA	436	43.83	c.43.1.2,c.43.1.2	75923,75924
2c5aA	379	47.46	c.2.1.2	129894
2jobA	102	47.78		
2e8eA	132	50.06		
2rcyA	262	50.15		
2ns5A	85	57.85		
2q4fA	149	60.64	a.24.10.2	139847
1m12A	84	61.34	a.64.1.1	84745
1d2fA	390	61.81	c.67.1.3	34411
1k3xA	262	64.54	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2v9dA	343	70.36		
2dyjA	95	72.46		
1gqnA	252	72.58	c.1.10.1	90514
1ic8A	194	73.74	a.4.1.1,a.35.1.1	76740,76741
2axkA	38	77.03		
2pgsA	451	79.01		
2ov6A	101	82.39		
3bk6A	188	82.87		
1svmA	377	89.88	c.37.1.20	112126