# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.4111		
2bj7A	138	0.4500	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	3.046	a.43.1.3	17455
1yoeA	322	7.565		
2c40A	312	10.92		
2masA	314	12.25	c.70.1.1	34810
2hcfA	234	13.19	c.108.1.6	136333
2gpeA	52	19.95		
1uz3A	102	25.59		
2vqeT	106	25.66		
1m12A	84	27.90	a.64.1.1	84745
1sxvA	172	33.06		
1fjgT	106	34.20	a.7.6.1	16338
1tw3A	360	41.00	a.4.5.29,c.66.1.12	107373,107374
1p94A	76	50.36	a.43.1.3	94380
2z1mA	345	50.42		
2ds2B	72	51.85		
1fadA	99	53.18	a.77.1.2	18428
1nuuA	252	55.54	c.26.1.3	86209
1gqnA	252	55.92	c.1.10.1	90514
2rcyA	262	58.01		
1kicA	339	63.86	c.70.1.1	72510
3c8cA	240	64.51		
1oc2A	348	65.74	c.2.1.2	92765
1vkbA	161	66.24	d.269.1.1	108643
1fc3A	120	71.98	a.4.6.3	16237
2pcsA	162	73.34		
1z1dA	103	74.48	a.4.5.16	124351
2q2kA	70	79.34		
2dpyA	438	80.14		
2dpmA	284	81.27	c.66.1.28	34246
1tx9A	151	87.62	a.84.1.1	119383