# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.5608		
2bj7A	138	0.8836	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	5.968	a.43.1.3	17455
2masA	314	6.769	c.70.1.1	34810
1yoeA	322	7.163		
1uz3A	102	7.577		
2c40A	312	9.094		
2gpeA	52	11.45		
1m12A	84	15.72	a.64.1.1	84745
1usuB	170	18.98	d.83.2.1	99886
2ds2B	72	21.42		
2pgwA	384	25.70		
2pmvA	399	26.40		
2vqeT	106	26.87		
1gk9B	557	33.51		
1sur	215	35.57		
2c5aA	379	41.06	c.2.1.2	129894
2e7uA	424	41.10		
3bqpA	80	43.45		
1d2fA	390	47.32	c.67.1.3	34411
2qp2A	511	48.04		
1f7lA	121	49.78	d.150.1.2	59666
2h2zA	306	50.02		
2an7A	83	50.48		
1kicA	339	54.08	c.70.1.1	72510
1fadA	99	54.61	a.77.1.2	18428
1fjgT	106	56.39	a.7.6.1	16338
1vh4A	435	57.21	b.80.6.1	100640
1oc2A	348	57.54	c.2.1.2	92765
2amdA	311	57.87		
2d7eA	105	57.97		
1xgkA	352	61.93	c.2.1.2	115286
1s3qA	173	65.95	a.25.1.1	118848
1f9aA	168	73.53	c.26.1.3	31602
1m2kA	249	75.95	c.31.1.5	84754
1vdlA	80	76.23	a.5.2.1	108528
2h29A	189	77.60		
2zc2A	78	80.28		
1tw3A	360	81.35	a.4.5.29,c.66.1.12	107373,107374
1ml8A	134	82.86	d.227.1.2	85013
1x93A	55	86.61		
2z1mA	345	87.47		
2gujA	155	88.24		
1krqA	167	89.41	a.25.1.1	68855
1hzfA	367	89.61	a.102.4.4	76731