# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bj7A 138 0.1655 a.43.1.3,d.58.18.4 128608,128609 2ca9A 148 0.1811 2gpeA 52 0.4606 2d7eA 105 1.426 2bsqE 77 1.774 a.43.1.8 129102 1p94A 76 2.310 a.43.1.3 94380 2cpgA 45 2.805 a.43.1.3 17455 1dzlA 505 4.230 b.121.6.1 23586 2amdA 311 4.471 1vh4A 435 4.564 b.80.6.1 100640 2h2zA 306 5.547 1x7yA 400 6.728 c.36.1.11 114944 2an7A 83 7.149 1x93A 55 7.939 1bazA 53 8.048 a.43.1.1 17421 2k29A 53 8.058 1yxaA 398 9.929 1ekrA 161 11.04 d.58.21.1 39380 1uz3A 102 11.72 1tc3C 51 12.17 a.4.1.2 16025 1oxkB 134 12.23 c.23.1.1 93691 1umdA 367 13.22 c.36.1.11 99599 1jhsA 188 13.24 d.107.1.1 84172 2o6lA 170 14.17 1qynA 153 14.19 d.33.1.1 96597 1qs0A 407 14.49 c.36.1.11 31829 2pv2A 103 14.91 1x9zA 188 15.23 d.292.1.1 115019 2ba3A 51 15.25 1gt1A 159 17.16 b.60.1.1 90515 2f1fA 164 18.98 d.58.18.6,d.58.18.6 132760,132761 1u8tA 129 19.38 c.23.1.1 113192 2bfdA 400 19.75 1fadA 99 25.55 a.77.1.2 18428 1vgyA 393 25.68 c.56.5.4,d.58.19.1 100620,100621 1ys7A 233 26.05 a.4.6.1,c.23.1.1 123961,123962 2eknA 159 27.39 1u14A 172 29.07 c.51.4.3 107579 1a3yA 149 29.19 b.60.1.1 27110 1zrnA 232 30.46 c.108.1.1 43323 1mb3A 124 30.68 c.23.1.1 78907 2pl1A 121 31.78 1x58A 62 31.86 a.4.1.1 121705 1yoeA 322 32.60 1tmyA 120 33.65 c.23.1.1 31083 1z85A 234 34.08 1oaiA 59 35.37 a.5.2.3 81255 2masA 314 35.66 c.70.1.1 34810 1xd3A 230 35.75 d.3.1.6 115145 1i4uA 181 36.96 b.60.1.1 61732 2eo4A 149 37.81 2ijeS 240 37.83 1u0sY 118 38.26 c.23.1.1 107566 1aj8A 371 43.22 a.103.1.1 18900 1go3F 107 43.45 a.60.8.2 65407 2gqtA 268 43.47 1c4kA 730 44.02 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1zndA 174 45.04 b.60.1.1 125380 1hssA 124 47.65 a.52.1.2 17819 3bpzA 202 48.10 2v95A 371 48.70 2ohdA 151 49.21 1ykiA 217 50.01 d.90.1.1 123520 2ra6A 166 50.11 1lf7A 182 50.56 b.60.1.1 73878 1cmcA 104 50.71 a.43.1.5 17462 1qy1A 174 52.51 b.60.1.1 96568 1e5pA 151 52.74 b.60.1.1 59272 2od0A 105 52.85 2c40A 312 53.41 2a19A 175 53.69 2jacA 110 53.78 2g4rA 160 54.34 2ivyA 101 55.45 1tuzA 118 55.56 a.39.1.7 112670 2oqrA 230 56.53 3cnqP 80 56.55 1y7yA 74 57.26 a.35.1.3 122729 1rifA 282 57.41 c.37.1.23 97507 3cogA 403 58.40 1wn2A 121 58.50 2oikA 154 58.71 2o8iA 165 60.42 2uuuA 584 60.53 1v4pA 157 63.01 d.67.1.2 113533 1jboB 172 63.23 a.1.1.3 84151 1zgzA 122 64.16 c.23.1.1 125065 1tuwA 109 64.24 d.58.4.8 107346 1utxA 66 65.15 a.35.1.3 108034 1tdzA 272 65.99 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1dzkA 157 67.84 b.60.1.1 27096 1f07A 321 68.35 c.1.16.3 59560 1gkmA 509 68.84 a.127.1.2 70228 1zm7A 230 69.94 2o71A 115 70.57 2ig8A 144 70.87 2r25B 133 71.03 3cqyA 370 71.86 2opwA 291 71.92 2czlA 272 72.48 c.94.1.1 131055 1wdcB 156 74.20 a.39.1.5 17302 2qsfX 171 74.77 2rdeA 251 75.19 2f7tA 227 75.46 2r5kA 424 75.72 3cg0A 140 75.74 3b7hA 78 76.13 2grmA 317 76.51 2hlvA 160 77.90 2yviA 111 78.37 1q7sA 117 79.59 c.131.1.1 96055 1sfkA 76 79.95 a.190.1.1 105488 1hkqA 132 80.70 a.4.5.10 83555 1x89A 178 81.19 b.60.1.1 121799 1scjB 71 81.46 d.58.3.2 39069 2q4vA 170 81.49 d.108.1.1 139878 2bsnA 145 81.65 2iihA 157 81.76 1pytA 94 82.18 d.58.3.1 39064 2bnmA 198 83.88 a.35.1.3,b.82.1.10 128835,128836 2cztA 167 84.20 2ol2A 395 84.65 2p1mA 163 84.97 2i9dA 217 85.84 1i52A 236 86.01 c.68.1.13 61767 1jkoC 52 87.58 a.4.1.2 66809 1l3aA 228 87.67 d.18.1.2 73531 2h4pA 394 88.34 1r45A 204 89.74 d.166.1.1 111683