a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0474 SfT1, Shigella flexneri, 80 residues
- gi|16762401|ref|NP_458018.1|_1:82 putative CopG-family DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
- gi|29143889|ref|NP_807231.1| putative CopG-family DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
- gi|161617154|ref|YP_001591119.1| hypothetical protein SPAB_04994 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]
- gi|167551485|ref|ZP_02345240.1| hypothetical protein Sentente_13439 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29]
- gi|168821629|ref|ZP_02833629.1| hypothetical protein Salentericaenterica_19752 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]
- gi|25513034|pir||AG0946 probable CopG-family DNA-binding protein STY3845 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) [Taxonomy]
- gi|16504705|emb|CAD09593.1| putative CopG-family DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi]
- gi|29139525|gb|AAO71091.1| putative CopG-family DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
- gi|161366518|gb|ABX70286.1| hypothetical protein SPAB_04994 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]
- gi|15804479|ref|NP_290519.1|_1:80 hypothetical protein Z5432 [Escherichia coli O157:H7 EDL933]
- gi|15834070|ref|NP_312843.1| hypothetical protein ECs4816 [Escherichia coli O157:H7 str. Sakai]
- gi|168711690|ref|ZP_02743967.1| hypothetical protein EschericoliO157_26817 [Escherichia coli O157:H7 str. EC4045]
- gi|168716426|ref|ZP_02748703.1| hypothetical protein EschericcoliO157_00510 [Escherichia coli O157:H7 str. EC4206]
- gi|168736899|ref|ZP_02769176.1| hypothetical protein EschecoliO157_17954 [Escherichia coli O157:H7 str. EC4115]
- gi|168748822|ref|ZP_02773844.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113]
- gi|168755567|ref|ZP_02780574.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401]
- gi|168761734|ref|ZP_02786741.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501]
- gi|168768184|ref|ZP_02793191.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486]
- gi|168775284|ref|ZP_02800291.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196]
- gi|168780800|ref|ZP_02805807.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076]
- gi|168786738|ref|ZP_02811745.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]
- gi|168794946|ref|ZP_02819953.1| hypothetical protein EschercoliO157_22068 [Escherichia coli O157:H7 str. EC4042]
- gi|168799539|ref|ZP_02824546.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]
- gi|12518782|gb|AAG59083.1|AE005620_5 orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
- gi|13364292|dbj|BAB38239.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
- gi|187769147|gb|EDU32991.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196]
- gi|188016824|gb|EDU54946.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113]
- gi|189001487|gb|EDU70473.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076]
- gi|189357121|gb|EDU75540.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401]
- gi|189362622|gb|EDU81041.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486]
- gi|189367882|gb|EDU86298.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501]
- gi|189373453|gb|EDU91869.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]
- gi|189378038|gb|EDU96454.1| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]
- gi|170769628|ref|ZP_02904081.1|_1:80 conserved hypothetical protein [Escherichia albertii TW07627]
- gi|170121436|gb|EDS90367.1| conserved hypothetical protein [Escherichia albertii TW07627]
- gi|157147330|ref|YP_001454649.1|_1:82 hypothetical protein CKO_03122 [Citrobacter koseri ATCC BAA-895]
- gi|157084535|gb|ABV14213.1| hypothetical protein CKO_03122 [Citrobacter koseri ATCC BAA-895]
- gi|56415878|ref|YP_152953.1|_1:80 putative CopG-family DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]
- gi|56130135|gb|AAV79641.1| putative CopG-family DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]
- gi|30064817|ref|NP_838988.1|_1:80 hypothetical protein S3782 [Shigella flexneri 2a str. 2457T]
- gi|56480471|ref|NP_709694.2| hypothetical protein SF3966 [Shigella flexneri 2a str. 301]
- gi|74314392|ref|YP_312811.1| hypothetical protein SSON_4059 [Shigella sonnei Ss046]
- gi|75238332|ref|ZP_00722331.1| COG1219: ATP-dependent protease Clp, ATPase subunit [Escherichia coli E110019]
- gi|82546236|ref|YP_410183.1| hypothetical protein SBO_3904 [Shigella boydii Sb227]
- gi|110807420|ref|YP_690940.1| hypothetical protein SFV_3605 [Shigella flexneri 5 str. 8401]
- gi|157158669|ref|YP_001465378.1| hypothetical protein EcE24377A_4418 [Escherichia coli E24377A]
- gi|157163361|ref|YP_001460679.1| hypothetical protein EcHS_A4117 [Escherichia coli HS]
- gi|170022098|ref|YP_001727052.1| hypothetical protein EcolC_4128 [Escherichia coli ATCC 8739]
- gi|187731828|ref|YP_001882586.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
- gi|188493475|ref|ZP_03000745.1| conserved hypothetical protein [Escherichia coli 53638]
- gi|304994|gb|AAB03023.1| matches PS00659: GLYCOSYL_HYDROL_F5 [Escherichia coli]
- gi|30043077|gb|AAP18799.1| hypothetical protein S3782 [Shigella flexneri 2a str. 2457T]
- gi|56384022|gb|AAN45401.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
- gi|73857869|gb|AAZ90576.1| conserved hypothetical protein [Shigella sonnei Ss046]
- gi|81247647|gb|ABB68355.1| conserved hypothetical protein [Shigella boydii Sb227]
- gi|110616968|gb|ABF05635.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
- gi|157069041|gb|ABV08296.1| conserved hypothetical protein [Escherichia coli HS]
- gi|157080699|gb|ABV20407.1| conserved hypothetical protein [Escherichia coli E24377A]
- gi|169757026|gb|ACA79725.1| conserved hypothetical protein [Escherichia coli ATCC 8739]
- gi|187428820|gb|ACD08094.1| conserved hypothetical protein [Shigella boydii CDC 3083-94]
- gi|188488674|gb|EDU63777.1| conserved hypothetical protein [Escherichia coli 53638]
- gi|152972685|ref|YP_001337831.1|_1:82 hypothetical protein KPN_04185 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
- gi|150957534|gb|ABR79564.1| hypothetical protein KPN_04185 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
- gi|110807421|ref|YP_690941.1|_43:120 hypothetical protein SFV_3606 [Shigella flexneri 5 str. 8401]
- gi|110616969|gb|ABF05636.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
- gi|15804478|ref|NP_290518.1|_4:81 hypothetical protein Z5431 [Escherichia coli O157:H7 EDL933]
- gi|15834069|ref|NP_312842.1| hypothetical protein ECs4815 [Escherichia coli O157:H7 str. Sakai]
- gi|30064818|ref|NP_838989.1| hypothetical protein S3783 [Shigella flexneri 2a str. 2457T]
- gi|56480470|ref|NP_709693.2| hypothetical protein SF3965 [Shigella flexneri 2a str. 301]
- gi|12518781|gb|AAG59082.1|AE005620_4 orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
- gi|13364291|dbj|BAB38238.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
- gi|30043078|gb|AAP18800.1| hypothetical protein S3783 [Shigella flexneri 2a str. 2457T]
- gi|56384021|gb|AAN45400.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
- gi|89110138|ref|AP_003918.1|_1:72 hypothetical protein [Escherichia coli W3110]
- gi|90111663|ref|NP_418326.2| conserved protein [Escherichia coli str. K-12 substr. MG1655]
- gi|170083362|ref|YP_001732682.1| hypothetical protein ECDH10B_4080 [Escherichia coli str. K-12 substr. DH10B]
- gi|191166438|ref|ZP_03028269.1| conserved hypothetical protein [Escherichia coli B7A]
- gi|84028022|sp|P0AFU6|YIIF_ECOLI Uncharacterized protein yiiF [Taxonomy]
- gi|84028023|sp|P0AFU7|YIIF_SHIFL Uncharacterized protein yiiF [Taxonomy]
- gi|85676169|dbj|BAE77419.1| conserved hypothetical protein [Escherichia coli W3110]
- gi|87082347|gb|AAD13452.2| conserved protein [Escherichia coli str. K-12 substr. MG1655]
- gi|169891197|gb|ACB04904.1| conserved protein [Escherichia coli str. K12 substr. DH10B]
- gi|190903538|gb|EDV63256.1| conserved hypothetical protein [Escherichia coli B7A]
- gi|157163360|ref|YP_001460678.1|_4:81 ribbon-helix-helix protein, copG family [Escherichia coli HS]
- gi|304993|gb|AAB03022.1| ORF_o81 [Escherichia coli]
- gi|157069040|gb|ABV08295.1| ribbon-helix-helix protein, copG family [Escherichia coli HS]
- gi|170681170|ref|YP_001746221.1|_1:72 hypothetical protein EcSMS35_4276 [Escherichia coli SMS-3-5]
- gi|170518888|gb|ACB17066.1| conserved hypothetical protein [Escherichia coli SMS-3-5]
- gi|26250655|ref|NP_756695.1|_4:81 Hypothetical protein yiiE [Escherichia coli CFT073]
- gi|91213434|ref|YP_543420.1| hypothetical protein YiiE [Escherichia coli UTI89]
- gi|26111086|gb|AAN83269.1|AE016770_69 Hypothetical protein yiiE [Escherichia coli CFT073]
- gi|91075008|gb|ABE09889.1| hypothetical protein YiiE [Escherichia coli UTI89]
- gi|89110139|ref|AP_003919.1|_1:72 predicted transcriptional regulator [Escherichia coli W3110]
- gi|168711689|ref|ZP_02743966.1| hypothetical protein EschericoliO157_26812 [Escherichia coli O157:H7 str. EC4045]
- gi|168716427|ref|ZP_02748704.1| hypothetical protein EschericcoliO157_00515 [Escherichia coli O157:H7 str. EC4206]
- gi|168736898|ref|ZP_02769175.1| hypothetical protein EschecoliO157_17949 [Escherichia coli O157:H7 str. EC4115]
- gi|168748823|ref|ZP_02773845.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4113]
- gi|168755566|ref|ZP_02780573.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4401]
- gi|168761735|ref|ZP_02786742.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4501]
- gi|168768183|ref|ZP_02793190.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4486]
- gi|168775285|ref|ZP_02800292.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4196]
- gi|168780799|ref|ZP_02805806.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4076]
- gi|168786737|ref|ZP_02811744.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC869]
- gi|168794947|ref|ZP_02819954.1| hypothetical protein EschercoliO157_22073 [Escherichia coli O157:H7 str. EC4042]
- gi|168799540|ref|ZP_02824547.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC508]
- gi|170022099|ref|YP_001727053.1| transcriptional regulator, CopG family [Escherichia coli ATCC 8739]
- gi|170083361|ref|YP_001732681.1| predicted transcriptional regulator [Escherichia coli str. K-12 substr. DH10B]
- gi|188493961|ref|ZP_03001231.1| conserved hypothetical protein [Escherichia coli 53638]
- gi|85676170|dbj|BAE77420.1| predicted transcriptional regulator [Escherichia coli W3110]
- gi|169757027|gb|ACA79726.1| transcriptional regulator, CopG family [Escherichia coli ATCC 8739]
- gi|169891196|gb|ACB04903.1| predicted transcriptional regulator [Escherichia coli str. K12 substr. DH10B]
- gi|187769153|gb|EDU32997.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4196]
- gi|188016822|gb|EDU54944.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4113]
- gi|188489160|gb|EDU64263.1| conserved hypothetical protein [Escherichia coli 53638]
- gi|189001400|gb|EDU70386.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4076]
- gi|189357198|gb|EDU75617.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4401]
- gi|189362608|gb|EDU81027.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4486]
- gi|189367918|gb|EDU86334.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC4501]
- gi|189373332|gb|EDU91748.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC869]
- gi|189378039|gb|EDU96455.1| ribbon-helix-helix protein, copG family [Escherichia coli O157:H7 str. EC508]
- gi|170769699|ref|ZP_02904152.1|_1:72 ribbon-helix-helix protein, copG family [Escherichia albertii TW07627]
- gi|170121507|gb|EDS90438.1| ribbon-helix-helix protein, copG family [Escherichia albertii TW07627]
- gi|33864751|ref|NP_896310.1|_2:80 hypothetical protein SYNW0215 [Synechococcus sp. WH 8102]
- gi|33632274|emb|CAE06730.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
- gi|145698336|ref|NP_418325.3|_1:70 predicted transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
- gi|83288128|sp|P0ADQ5|YIIE_ECOLI Uncharacterized protein yiiE [Taxonomy]
- gi|83288129|sp|P0ADQ6|YIIE_SHIFL Uncharacterized protein yiiE [Taxonomy]
- gi|152112393|sp|Q8X8C1|YIIE_ECO57 Uncharacterized protein yiiE [Taxonomy]
- gi|152112397|sp|Q0SZ79|YIIE_SHIF8 Uncharacterized protein yiiE [Taxonomy]
- gi|145693207|gb|AAD13451.3| predicted transcriptional regulator [Escherichia coli str. K-12 substr. MG1655]
- gi|110644231|ref|YP_671961.1|_1:72 hypothetical protein YiiE [Escherichia coli 536]
- gi|170681663|ref|YP_001746220.1| ribbon-helix-helix protein, copG family [Escherichia coli SMS-3-5]
- gi|191173875|ref|ZP_03035395.1| ribbon-helix-helix protein, copG family [Escherichia coli F11]
- gi|110345823|gb|ABG72060.1| hypothetical protein YiiE [Escherichia coli 536]
- gi|170519381|gb|ACB17559.1| ribbon-helix-helix protein, copG family [Escherichia coli SMS-3-5]
- gi|190905833|gb|EDV65452.1| ribbon-helix-helix protein, copG family [Escherichia coli F11]
- gi|170695116|ref|ZP_02886264.1|_1:72 putative transcriptional regulator, CopG family [Burkholderia graminis C4D1M]
- gi|170139968|gb|EDT08148.1| putative transcriptional regulator, CopG family [Burkholderia graminis C4D1M]
- gi|191166466|ref|ZP_03028297.1|_1:72 ribbon-helix-helix protein, copG family [Escherichia coli B7A]
- gi|190903566|gb|EDV63284.1| ribbon-helix-helix protein, copG family [Escherichia coli B7A]
- gi|107026621|ref|YP_624132.1|_1:72 hypothetical protein Bcen_4273 [Burkholderia cenocepacia AU 1054]
- gi|116692189|ref|YP_837722.1| hypothetical protein Bcen2424_4093 [Burkholderia cenocepacia HI2424]
- gi|170735813|ref|YP_001777073.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
- gi|105895995|gb|ABF79159.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
- gi|116650189|gb|ABK10829.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
- gi|169818001|gb|ACA92583.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
- gi|134293345|ref|YP_001117081.1|_1:72 hypothetical protein Bcep1808_4656 [Burkholderia vietnamiensis G4]
- gi|134136502|gb|ABO57616.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
- gi|152112394|sp|Q0TAG9|YIIE_ECOL5_1:70 Uncharacterized protein yiiE [Taxonomy]
- gi|83592397|ref|YP_426149.1|_1:71 Helix-turn-helix protein, CopG [Rhodospirillum rubrum ATCC 11170]
- gi|83575311|gb|ABC21862.1| Helix-turn-helix protein, CopG [Rhodospirillum rubrum ATCC 11170]
- gi|15965038|ref|NP_385391.1|_1:71 hypothetical protein SMc01933 [Sinorhizobium meliloti 1021]
- gi|15074217|emb|CAC45864.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
- gi|152112395|sp|Q8FBE9|YIIE_ECOL6_1:70 Uncharacterized protein yiiE [Taxonomy]
- gi|152112396|sp|Q1R425|YIIE_ECOUT Uncharacterized protein yiiE [Taxonomy]
- gi|86361284|ref|YP_473171.1|_1:71 hypothetical protein RHE_PF00556 [Rhizobium etli CFN 42]
- gi|86285386|gb|ABC94444.1| hypothetical conserved protein [Rhizobium etli CFN 42]
- gi|87123067|ref|ZP_01078918.1|_1:70 hypothetical protein RS9917_04390 [Synechococcus sp. RS9917]
- gi|86168787|gb|EAQ70043.1| hypothetical protein RS9917_04390 [Synechococcus sp. RS9917]
- gi|37524214|ref|NP_927558.1|_1:76 hypothetical protein plu0193 [Photorhabdus luminescens subsp. laumondii TTO1]
- gi|36783637|emb|CAE12488.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
- gi|15892220|ref|NP_359934.1|_1:72 hypothetical protein RC0297 [Rickettsia conorii str. Malish 7]
- gi|15619356|gb|AAL02835.1| unknown [Rickettsia conorii str. Malish 7]
- gi|78062801|ref|YP_372709.1|_45:121 Helix-turn-helix protein, CopG [Burkholderia sp. 383]
- gi|77970686|gb|ABB12065.1| Helix-turn-helix protein, CopG [Burkholderia sp. 383]
- gi|34580759|ref|ZP_00142239.1|_1:72 hypothetical protein [Rickettsia sibirica 246]
- gi|28262144|gb|EAA25648.1| unknown [Rickettsia sibirica 246]
- gi|167471417|ref|ZP_02336121.1|_1:72 hypothetical protein RafrE_01685 [Rickettsia africae ESF-5]
- gi|157368301|ref|YP_001476290.1|_1:68 hypothetical protein Spro_0052 [Serratia proteamaculans 568]
- gi|157320065|gb|ABV39162.1| conserved hypothetical protein [Serratia proteamaculans 568]
- gi|87301053|ref|ZP_01083894.1|_1:70 hypothetical protein WH5701_14246 [Synechococcus sp. WH 5701]
- gi|87284021|gb|EAQ75974.1| hypothetical protein WH5701_14246 [Synechococcus sp. WH 5701]
- gi|163705809|ref|ZP_02123802.1|_1:72 conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
- gi|162428825|gb|EDQ39467.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
- gi|88810677|ref|ZP_01125934.1|_1:70 hypothetical protein NB231_16393 [Nitrococcus mobilis Nb-231]
- gi|88792307|gb|EAR23417.1| hypothetical protein NB231_16393 [Nitrococcus mobilis Nb-231]
- gi|94263729|ref|ZP_01287537.1|_19:100 Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
- gi|94266198|ref|ZP_01289908.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
- gi|93453246|gb|EAT03701.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
- gi|93455928|gb|EAT06087.1| Helix-turn-helix protein, CopG [delta proteobacterium MLMS-1]
- gi|158522353|ref|YP_001530223.1|_1:74 CopG domain protein DNA-binding domain protein [Desulfococcus oleovorans Hxd3]
- gi|158511179|gb|ABW68146.1| CopG domain protein DNA-binding domain protein [Desulfococcus oleovorans Hxd3]
- gi|87199222|ref|YP_496479.1|_1:76 CopG-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444]
- gi|87134903|gb|ABD25645.1| CopG-like DNA-binding protein [Novosphingobium aromaticivorans DSM 12444]
- gi|149200683|ref|ZP_01877676.1|_1:64 transcriptional regulator, CopG family protein [Lentisphaera araneosa HTCC2155]
- gi|149136227|gb|EDM24687.1| transcriptional regulator, CopG family protein [Lentisphaera araneosa HTCC2155]
- gi|149200536|ref|ZP_01877547.1|_1:64 transcriptional regulator, CopG family protein [Lentisphaera araneosa HTCC2155]
- gi|149136385|gb|EDM24827.1| transcriptional regulator, CopG family protein [Lentisphaera araneosa HTCC2155]
- gi|161521038|ref|YP_001584465.1|_1:72 hypothetical protein Bmul_4494 [Burkholderia multivorans ATCC 17616]
- gi|189352784|ref|YP_001948411.1| hypothetical protein BMULJ_04016 [Burkholderia multivorans ATCC 17616]
- gi|160345088|gb|ABX18173.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616]
- gi|189336806|dbj|BAG45875.1| hypothetical protein [Burkholderia multivorans ATCC 17616]
- gi|29654541|ref|NP_820233.1|_1:76 transcriptional regulator, CopG family [Coxiella burnetii RSA 493]
- gi|153208842|ref|ZP_01947066.1| ribbon-helix-helix protein, copG family [Coxiella burnetii 'MSU Goat Q177']
- gi|154706209|ref|YP_001424675.1| ribbon-helix-helix protein, copG family [Coxiella burnetii Dugway 5J108-111]
- gi|161831530|ref|YP_001597088.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA 331]
- gi|165921442|ref|ZP_02219630.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA 334]
- gi|29541808|gb|AAO90747.1| transcriptional regulator, CopG family [Coxiella burnetii RSA 493]
- gi|120575693|gb|EAX32317.1| ribbon-helix-helix protein, copG family [Coxiella burnetii 'MSU Goat Q177']
- gi|154355495|gb|ABS76957.1| ribbon-helix-helix protein, copG family [Coxiella burnetii Dugway 5J108-111]
- gi|161763397|gb|ABX79039.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA 331]
- gi|165916757|gb|EDR35361.1| ribbon-helix-helix protein, copG family [Coxiella burnetii RSA 334]
- gi|85373311|ref|YP_457373.1|_1:59 hypothetical protein ELI_02420 [Erythrobacter litoralis HTCC2594]
- gi|84786394|gb|ABC62576.1| hypothetical protein ELI_02420 [Erythrobacter litoralis HTCC2594]
- gi|87123523|ref|ZP_01079374.1|_1:74 transcriptional regulator, CopG family protein [Synechococcus sp. RS9917]
- gi|86169243|gb|EAQ70499.1| transcriptional regulator, CopG family protein [Synechococcus sp. RS9917]

                    10        20         30        40                  
                    |         |          |         |                  
   1 ...M...NSLAGIDMGRILLDLSNEVIKQLDDLEV.QRNLPRADLLREAVDQYL.....I....N
   2 ...M...SMMAGMDMGRILLDLSDDVIKRLDDLKV.QRNLPRAELLREAVEQYL.....E....R
   3 ...M...NSLAGIDMGRIILDLSNEVIKQLDDLEV.QRNLPRTELLREAVDQYL.....V....N
   4 ...M...SAMAGMDMGRILLDLSDEVIKRLDDLKV.QRNLPRAELLREAVDQYL.....E....N
   5 ...M...SMMAGMEMGRILLDLSDEVIKRLDDLKQ.QRNLPRAELLREAVEQYL.....E....R
   6 ...-...-MMAGMDMGRILLDLSDDVIKRLDDLKV.QRNLPRAELLREAVEQYL.....E....R
   7 ...M...NSLAGIDMGRILLDLSNEVIKQLDDLEV.QRNLPRADLLREAVDQYL.....I....N
   8 ...M...SMMAERDMGRILLDLSDDVIQRLDDLKV.QRNIPRAELLREAVEQYL.....E....K
   9 msnI...CKVVVMAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  10 msnI...CKVVVMAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  11 ...-...-------MGRILLDLSNEVIKQLDDLEV.QRNLPRADLLREAVDQYL.....I....N
  12 msnI...CKVLVMAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  13 ...-...-------MGRILLNLSNELFKQLDDLEV.QRNLPRAELLREAVDQYL.....V....N
  14 msnI...CKVVVMAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  15 ...-...-----MAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  16 ...-...-----MAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  17 m..M...TTSDNADCMRTIIDLPEDERAVLDAHCR.QRGLSRAAAIREALHLWL.....-....Q
  18 ...-...-------MNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  19 ...-...-----MAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  20 ...-...-------MSRILIDLPDAQVEELAVLVE.TEQRPRAAVIRDAIEAYI.....A....Q
  21 ...-...-----MAMNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  22 ...-...-------MSRILVDLSDGQLDELAVIVE.TQHRPRAAIIRDAIDAYI.....A....L
  23 ...-...-------MSRILIDLSNGQLDELAAIVD.TEQRPRAAIIRDAIDAYI.....A....Q
  24 ...-...-------MNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  25 ...-...--------MRALVDMSDAQIEALDTLAK.RVGQSRAALIRAAIDDYL.....D....R
  26 ...-...--------MRALIDMNDTQVEALDTLAK.RVRRSRAALIREAIDDYL.....N....R
  27 ...-...-------MNTVFLHLSEEAIKRLNKLRG.WRKVSRSAILREAVEQYL.....E....R
  28 ...-...--------MRTLVDIGDPEVKALDRLAQ.REKMSRAALIRKAINDFL.....A....R
  29 ...-...--------MRTIIDLPEDERAVLDAHCR.QRGLSRAAAIREALHLWL.....-....Q
  30 ...-...----MVAMVEININLLEETIKKREIVEKcSPDKSRATQSRRAVDTYL.....D....A
  31 ...-...--------MRTIINIADSQIKILDKISK.-KKISRDKIIGQALTSYI.....A....S
  32 srwP...RPVTEVAMIRIPVDLSNDQHAALTRIAT.RQSSSPAEIIRDAIDAYI.....A....Q
  33 ...-...--------MRTIINIADSQIKILDKVSK.-KKISRDKIIGQALTSYI.....A....S
  34 ...-...--------MKTIINIADSQIKILDKISK.-KKISRDKIIGQALTSYI.....A....S
  35 ...-...-----------MIDLPEEDLRQLDNLKN.IRHVPRAEIIRQAVSRYL.....V....V
  36 ...-...--------MRTIVDLPEPEREQLDAQCR.QLGISRAAALREALRLWL.....-....K
  37 ...-...--------MLTTIEILPEQAEALDQIAA.REHTSRDALVRTLIADFV.....A....Q
  38 ...-...--------MRTIVDLPEKELQAIKALAK.RERISQAEAVRRAVRHYL.....D....T
  39 ...VygsHINGRCLMIRTQVYLTEKERLAISSLAE.ATGKKQAELIREAVDIFI.....ElrsgR
  40 ...-...-------MIRTQIYLTEKQRNQLNAIAK.VAGKNQSELIREAIDNLI.....G....K
  41 ...-...-------MTRILADLPDEDIEKLDARAA.ALGKSRAALVREAVKLFL.....V....Q
  42 ...-...-------MIRTQVYITKEEKESLESLAQ.STGKSQSELIRNAIDTFI.....E....N
  43 ...-...-------MIRTQVYITKEEKESLESLAQ.STGKSQSELIRNAIDTFI.....E....S
  44 ...-...-------MRRISINLPATVVAEPTRIAE.SEHRALDAVIRDAIGRHV.....A....R
  45 ...-...-------MIRTQIYLTKQERKYLNLLSQ.KIGKSQSALIREAIDQFIkahlkA....R
  46 ...-...-------MSRILIDLPDDDIRSLDAMAR.ANGRSRAAEMREAVALYL.....R....R
  47 ...-...-------MRRTQIYLSEQEHEGLRVLAQ.RSGRTQSALIREALDEFL.....Q....R


         50                   60          70           80   
         |                    |           |            |   
   1 ....Q....SQ..T.ART....SVPGIWQGCE..EDGVEYQRKLREE...W...
   2 ....Q....DRaeT.TIS....KALGLWQGCE..EDGVEYQRKLREE...W...
   3 ....Q....SQ..T.VRT....SAFGIWQGCE..EDGVEYQRKLREE...W...
   4 ....Q....SK..T.TIS....SALGIWQGCE..EDGVEYQRKLREE...W...
   5 ....Q....GQaeT.TIS....DALGLWQGCE..EDGVEYERKLREE...W...
   6 ....Q....DRaeT.TIS....KALGLWQGCE..EDGVEYQRKLREE...W...
   7 ....Q....SQ..T.ART....SVPGIWQGCE..EDGVEYQRKLREE...W...
   8 ....Q....DRakD.TIS....SALGLWQDCE..EDGMEYQRQLRKE...W...
   9 ....Q....QF..P.VR-....KAKGGRQKGE..VVGVDDQCKEHKE...-...
  10 ....Q....QF..P.VR-....KAKGGRQKGE..VVGVDDQCKEHKE...-...
  11 ....Q....SQ..T.ART....SVPGIWQGCE..EDGVEYQRKLREE...W...
  12 ....Q....QF..P.VR-....KAKGGRQKGE..VVGVDDQCKEHKE...-...
  13 ....Q....SQ..T.ARA....SAFGIWQGSE..EDGVEYQRKLREE...W...
  14 ....Q....QF..P.VR-....KAKGGRQRDE..AVGVEELCKQHKE...-...
  15 ....Q....QF..P.VR-....KAKGGRQKGE..VVGVDDQCKEHKE...-...
  16 ....Q....QF..P.VR-....KAKGGRQRGE..TVGVDDQCKEHKE...-...
  17 ....H....QH..P.RSA....DVFGLWRDRN..ADALTLESELRQE...Wtr.
  18 ....Q....QF..P.VR-....KAKGGRQKGE..VVGVDDQCKEHKE...-...
  19 ....Q....QF..P.VR-....KAKGGRQRGE..TVVVDDQCKEHKE...-...
  20 ....H....RR..A.RGA....DVFGLWKSKK..VDGLEYQQELRSE...W...
  21 ....Q....QF..P.VRK....AKRG-RQRGE..TVGVDDQCKEHKE...-...
  22 ....N....KH..R.LAD....DVFGLWKDRT..VDGLAYQEELRSE...W...
  23 ....H....KR..S.HAD....IVFGLWKDRA..VDGLTYQEALRSE...W...
  24 ....Q....QF..P.VR-....KAKGGRQRGE..TVVVDDQCKEHKE...-...
  25 ....H....HR..E.QVA....DGFGLWGKRK..VDGLAYQEKARSE...W...
  26 ....H....HR..E.QIE....DGFGLWGKRK..VDGLAYQEKVRGE...W...
  27 ....Q....QF..P.VR-....KAKGGRQRDE..AVGVEELCKQHKE...-...
  28 ....N....NA..D.IEA....EAFGLWGDRK..IDGLAYQENMRRE...W...
  29 ....H....QQ..P.RSD....NVFGLWRDRN..TDALTLESELRQE...Wtr.
  30 ....N....IP..E.QNN....SVFGLWGDKK..LDGLKYQGKLREE...W...
  31 ....N....DHnnK.AFE....NAFGLWKDKN..LDSVEYQTKLCNE...Wnk.
  32 ....Q....DR..T.LAD....NVFGLWKGR-..-DVVD-QEDLRSE...W...
  33 ....N....DHnnK.AFE....NAFGLWKDKN..LDSVEYQAKLCNE...Wne.
  34 ....N....DHnnK.AFE....NAFGLWKDKN..LDSVEYQAKLCNE...Wne.
  35 ....N....RV..D.DPS....NAFGLWSGVL..GDGVDYENQLREE...Wd..
  36 ....Q....QH..P.RHE....KVFGLWKDRP..ADALVLQEAFRQE...Wshh
  37 ....Ha...PK..P.DIQ....SFFGIWRERG..VDGLEYQERLRAE...W...
  38 ....H....PP..Q.PTE....EAFGVWANR-..CDGLSYQEALRQE...Wpp.
  39 ....H....RD..E.ILD....QAAGMWRDRN..-D-LPDFTASRQS...Wdrg
  40 tgggH....RA..S.VLR....QAAGIWKDR-..TD-LPDFDALREE...Wnrn
  41 ....G....SSsnD.WID....RFAGLWAERDdiPDSVAYQRAIREDrrpY...
  42 ....N....NT..K.NKKasllNAFGMWKTND..HD---FQQ-----...-...
  43 ....N....NT..K.NKKasllNAFGMWKTND..HD---FQQ-----...-...
  44 ....I....GE..A.RSA....DVFGLWRHRA..RSGIDYQRDARAE...Wsce
  45 ....D....DH..QaAME....AAKGLWADRK..-D-LSNLTKIRKE...Ldnr
  46 ....Qa...DG..N.WIA....QGSGYWADKDa.AD-----------...-...
  47 ....QeaggRL..A.RLR....EGRGLWSERN..-D-LPDWDALRRE...Ldr.