# TARGET T0474 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0474.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 16.4906 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.092 0.044 0.013 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.008 0.069 0.672 2 N 0.036 0.057 0.009 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.160 0.008 0.182 0.533 3 S 0.038 0.042 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.106 0.008 0.087 0.707 4 L 0.050 0.143 0.007 0.001 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.121 0.013 0.218 0.435 5 A 0.080 0.157 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.069 0.014 0.273 0.393 6 G 0.127 0.260 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.050 0.024 0.095 0.428 7 I 0.159 0.316 0.010 0.001 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.119 0.020 0.045 0.318 8 D 0.077 0.300 0.005 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.099 0.016 0.090 0.393 9 M 0.124 0.207 0.008 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.267 0.037 0.051 0.295 10 G 0.122 0.171 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.338 0.069 0.070 0.213 11 R 0.209 0.051 0.068 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.371 0.047 0.095 0.151 12 I 0.013 0.046 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.758 0.005 0.038 0.122 13 L 0.005 0.021 0.006 0.002 0.011 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.002 0.006 0.009 0.004 0.737 0.004 0.045 0.142 14 L 0.006 0.012 0.002 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.015 0.034 0.021 0.008 0.708 0.004 0.047 0.133 15 D 0.008 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.015 0.002 0.013 0.007 0.006 0.005 0.611 0.005 0.083 0.224 16 L 0.007 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.289 0.002 0.074 0.608 17 S 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.001 0.572 0.380 18 N 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.003 0.058 0.917 19 E 0.031 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.127 0.820 20 V 0.048 0.040 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.684 0.219 21 I 0.028 0.806 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.035 0.122 22 K 0.016 0.884 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.011 0.084 23 Q 0.021 0.932 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.004 0.036 24 L 0.070 0.890 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.023 25 D 0.017 0.955 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.020 26 D 0.043 0.855 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.020 0.002 0.076 27 L 0.075 0.857 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.003 0.044 28 E 0.022 0.916 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.014 0.038 29 V 0.031 0.889 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.007 0.004 0.062 30 Q 0.049 0.887 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.007 0.001 0.050 31 R 0.050 0.875 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.012 0.005 0.051 32 N 0.341 0.214 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.228 0.008 0.165 33 L 0.379 0.020 0.409 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.006 0.019 0.154 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 35 R 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.064 0.923 36 A 0.054 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.168 0.733 37 D 0.391 0.100 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.056 0.445 38 L 0.061 0.802 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.126 39 L 0.004 0.937 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.052 40 R 0.009 0.927 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.058 41 E 0.009 0.967 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.022 42 A 0.020 0.969 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.007 43 V 0.004 0.984 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.010 44 D 0.008 0.966 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.016 45 Q 0.021 0.939 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.001 0.020 46 Y 0.039 0.904 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.001 0.017 47 L 0.009 0.920 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.005 0.034 48 I 0.010 0.934 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.005 0.008 0.032 49 N 0.132 0.770 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.034 0.003 0.045 50 Q 0.193 0.645 0.026 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.044 0.007 0.076 51 S 0.079 0.300 0.156 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.061 0.045 0.330 52 Q 0.077 0.099 0.117 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.032 0.078 0.546 53 T 0.032 0.078 0.016 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.010 0.180 0.656 54 A 0.074 0.088 0.007 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.010 0.275 0.489 55 R 0.147 0.307 0.006 0.002 0.002 0.002 0.001 0.001 0.003 0.002 0.001 0.001 0.003 0.002 0.001 0.001 0.066 0.028 0.119 0.304 56 T 0.316 0.275 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.056 0.028 0.051 0.258 57 S 0.294 0.291 0.008 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.031 0.040 0.288 58 V 0.271 0.212 0.051 0.002 0.001 0.001 0.002 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.091 0.030 0.035 0.296 59 P 0.007 0.027 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.001 0.016 0.908 60 G 0.031 0.023 0.010 0.002 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.096 0.010 0.081 0.732 61 I 0.371 0.066 0.010 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.006 0.004 0.002 0.099 0.011 0.086 0.326 62 W 0.046 0.144 0.003 0.002 0.002 0.001 0.001 0.001 0.003 0.004 0.002 0.002 0.008 0.006 0.003 0.002 0.189 0.007 0.091 0.482 63 Q 0.097 0.153 0.003 0.002 0.006 0.009 0.004 0.004 0.016 0.014 0.011 0.005 0.011 0.010 0.006 0.005 0.143 0.020 0.151 0.330 64 G 0.107 0.149 0.003 0.001 0.001 0.001 0.001 0.001 0.010 0.007 0.008 0.003 0.005 0.004 0.002 0.002 0.089 0.033 0.079 0.493 65 C 0.201 0.070 0.017 0.001 0.001 0.001 0.001 0.001 0.007 0.005 0.006 0.001 0.002 0.001 0.001 0.001 0.057 0.056 0.104 0.469 66 E 0.063 0.065 0.030 0.002 0.001 0.001 0.001 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.046 0.026 0.130 0.627 67 E 0.070 0.072 0.040 0.004 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.022 0.164 0.534 68 D 0.091 0.091 0.016 0.004 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.024 0.154 0.571 69 G 0.170 0.092 0.025 0.003 0.006 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.065 0.028 0.157 0.444 70 V 0.076 0.158 0.043 0.003 0.007 0.004 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.107 0.009 0.207 0.371 71 E 0.020 0.157 0.005 0.001 0.005 0.005 0.006 0.002 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.169 0.004 0.251 0.367 72 Y 0.033 0.381 0.003 0.001 0.003 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.058 0.010 0.093 0.403 73 Q 0.037 0.663 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.074 0.013 0.035 0.168 74 R 0.016 0.801 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.007 0.039 0.120 75 K 0.036 0.822 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.015 0.018 0.093 76 L 0.070 0.826 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.039 0.006 0.047 77 R 0.070 0.783 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.046 0.007 0.060 78 E 0.056 0.676 0.071 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.046 0.013 0.123 79 E 0.172 0.472 0.049 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.070 0.046 0.170 80 W 0.190 0.406 0.051 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.028 0.030 0.271