# List of top-scoring protein chains for T0474.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cpgA	45	6.326	a.43.1.3	17455
1b01A	45	6.530	a.43.1.3	17458
2bj7A	138	6.744	a.43.1.3,d.58.18.4	128608,128609
1p94A	76	7.544	a.43.1.3	94380
2jxgA	45	8.775		
2gpeA	52	14.36		
2ay0A	58	20.40		
2q2kA	70	21.78		
2rexA	121	36.63		
2r2oA	138	37.81		
2hzaA	133	49.46	a.43.1.3,d.58.18.4	136907,136908
1gobA	155	49.47	c.55.3.1	33565
2a87A	335	63.54		
1kz9A	159	68.41	c.16.1.1	73339
1kyyA	159	69.09	c.16.1.1	73307
2an7A	83	72.00		
1rbtA	155	77.58	c.55.3.1	33555
1m6xC	423	82.60	a.60.9.1,d.163.1.1	78712,78713
1floA	422	87.10	a.60.9.1,d.163.1.1	18106,42166