# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.008174	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.008877		
2cpgA	45	0.1437	a.43.1.3	17455
2gpeA	52	0.3201		
1p94A	76	1.039	a.43.1.3	94380
2q2kA	70	4.571		
2an7A	83	6.272		
1n69A	81	7.633	a.64.1.3	80118
2k29A	53	8.654		
2bsqE	77	9.828	a.43.1.8	129102
1uz3A	102	11.94		
1x93A	55	12.87		
2d7eA	105	13.04		
1utuA	108	15.10		
1k4mA	213	16.56	c.26.1.3	77258
1q9jA	422	18.73	c.43.1.2,c.43.1.2	104590,104591
1n3hA	207	22.68	b.55.1.2	91564
2qkmB	266	22.84		
1qynA	153	33.57	d.33.1.1	96597
1svmA	377	34.85	c.37.1.20	112126
2ba3A	51	38.11		
3bqpA	80	38.12		
2gs4A	166	44.25	a.25.1.4	135575
1yoeA	322	46.08		
1jmxA	494	52.40	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2amdA	311	53.01		
1kamA	194	54.88	c.26.1.3	72254
1zbmA	280	59.41	c.94.1.1	124858
2jgpA	520	61.64		
1si6X	282	62.52	d.151.1.2	118968
2hqhE	25	62.91		
1q2wA	308	63.88	b.47.1.4	88355
2h2zA	306	66.61		
1e5pA	151	68.41	b.60.1.1	59272
2qp2A	511	72.69		
1vdlA	80	73.23	a.5.2.1	108528
2vebA	195	74.81		
2jobA	102	74.92		
1yioA	208	76.74	a.4.6.2,c.23.1.1	123326,123327
2dbnA	461	78.45		
2b69A	343	78.67	c.2.1.2	127974
1fx3A	169	79.11	d.33.1.1	38524
2masA	314	80.87	c.70.1.1	34810
1i06A	180	81.88	b.60.1.1	27131
2p1aA	154	82.04		
1qy1A	174	82.89	b.60.1.1	96568
2vqeT	106	85.77		
2cr9A	139	86.15	d.297.1.1	130735
2pn6A	150	87.31