# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.006436		
2bj7A	138	0.006925	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.1948	a.43.1.3	17455
2gpeA	52	0.4069		
1p94A	76	1.191	a.43.1.3	94380
2q2kA	70	2.525		
2an7A	83	3.427		
2k29A	53	6.003		
1n69A	81	6.875	a.64.1.3	80118
2bsqE	77	10.66	a.43.1.8	129102
1x93A	55	11.22		
2qkmB	266	13.40		
3bqpA	80	16.51		
2d7eA	105	17.37		
1q9jA	422	20.74	c.43.1.2,c.43.1.2	104590,104591
1uz3A	102	21.60		
1utuA	108	24.73		
1jmxA	494	30.30	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1n3hA	207	31.31	b.55.1.2	91564
2gs4A	166	33.49	a.25.1.4	135575
1qynA	153	34.53	d.33.1.1	96597
2vqeT	106	34.53		
1k4mA	213	44.80	c.26.1.3	77258
1zbmA	280	45.08	c.94.1.1	124858
2jobA	102	45.85		
2cr9A	139	49.32	d.297.1.1	130735
1svmA	377	52.47	c.37.1.20	112126
2qp2A	511	52.77		
1vdlA	80	62.50	a.5.2.1	108528
1m12A	84	66.23	a.64.1.1	84745
1xwiA	322	67.42		
1fx3A	169	71.62	d.33.1.1	38524
2b69A	343	72.22	c.2.1.2	127974
1yoeA	322	74.32		
1si6X	282	75.68	d.151.1.2	118968
2ba3A	51	77.89		
2amdA	311	80.12		
2uubT	106	81.60	a.7.6.1	139951
2hqhE	25	81.90		
1qveA	126	85.78	d.24.1.1	104594
1k3xA	262	88.91	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244