# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.001597		
2bj7A	138	0.002770	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.04591	a.43.1.3	17455
2gpeA	52	0.09737		
1p94A	76	0.4478	a.43.1.3	94380
2k29A	53	1.015		
2an7A	83	1.084		
1q9jA	422	4.751	c.43.1.2,c.43.1.2	104590,104591
2bsqE	77	5.448	a.43.1.8	129102
2d7eA	105	5.571		
2q2kA	70	7.021		
1x93A	55	8.341		
1uz3A	102	8.868		
1k4mA	213	9.240	c.26.1.3	77258
1utuA	108	10.98		
1n69A	81	11.84	a.64.1.3	80118
2ba3A	51	13.13		
2jgpA	520	16.68		
1svmA	377	23.97	c.37.1.20	112126
2qkmB	266	25.06		
1l5aA	436	25.71	c.43.1.2,c.43.1.2	75923,75924
2amdA	311	30.04		
3bqpA	80	34.49		
2h2zA	306	36.02		
2hqhE	25	39.11		
1q2wA	308	42.08	b.47.1.4	88355
2adlA	72	42.86		
2qhoB	53	45.37		
1fx3A	169	45.59	d.33.1.1	38524
1qynA	153	53.26	d.33.1.1	96597
1xwiA	322	54.00		
1qtwA	285	55.05	c.1.15.1	29392
1gpeA	587	57.85	c.3.1.2,d.16.1.1	30387,37951
1sdeA	347	58.14	e.3.1.1	112073
1i06A	180	60.14	b.60.1.1	27131
1tuzA	118	63.12	a.39.1.7	112670
3b55A	451	63.29		
2h27A	73	64.88	a.4.13.2	135993
2b69A	343	65.71	c.2.1.2	127974
1m12A	84	66.43	a.64.1.1	84745
1nwbA	124	67.81	b.124.1.1	86296
1k3xA	262	68.91	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1e5pA	151	69.07	b.60.1.1	59272
1i4nA	251	70.14	c.1.2.4	71114
1qveA	126	70.71	d.24.1.1	104594
1vdlA	80	71.96	a.5.2.1	108528
2v9dA	343	72.08		
2cr9A	139	73.06	d.297.1.1	130735
1yoeA	322	73.27		
1yioA	208	73.74	a.4.6.2,c.23.1.1	123326,123327
2d1vA	108	73.81		
1jmxA	494	75.15	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1ei5A	520	75.36	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
2p1aA	154	75.80		
2hzqA	174	76.10		
1dzkA	157	76.21	b.60.1.1	27096
1l0gA	358	77.42	e.3.1.1	73400
1rgyA	360	79.46	e.3.1.1	97456
2jobA	102	80.11		
2pn6A	150	80.54		
1surA	215	81.41	c.26.2.2	31620
1qy1A	174	81.45	b.60.1.1	96568
1z7bA	358	83.15	c.2.1.2	124599
1wxiA	275	84.94	c.26.2.1	121400
1qqsA	174	86.86	b.60.1.1	27143
1k20A	310	87.19	c.107.1.1	68027
2yvlA	248	87.51		
1xrxA	50	87.58	a.43.1.7	122264
1ru8A	232	88.32	c.26.2.1	97849
1k1vA	41	89.80	a.37.1.1	71999