# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.003386		
2bj7A	138	0.003473	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.1572	a.43.1.3	17455
2gpeA	52	0.5553		
1p94A	76	1.134	a.43.1.3	94380
2q2kA	70	2.634		
2k29A	53	3.068		
2an7A	83	4.536		
1n69A	81	5.564	a.64.1.3	80118
1x93A	55	7.491		
2bsqE	77	10.80	a.43.1.8	129102
1n3hA	207	17.68	b.55.1.2	91564
1uz3A	102	20.84		
1utuA	108	23.07		
2qkmB	266	24.79		
1k4mA	213	28.12	c.26.1.3	77258
3bqpA	80	30.18		
2d7eA	105	34.51		
2gs4A	166	37.93	a.25.1.4	135575
2p1aA	154	43.68		
1jmxA	494	44.15	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1qynA	153	46.63	d.33.1.1	96597
1q9jA	422	47.52	c.43.1.2,c.43.1.2	104590,104591
1yioA	208	47.79	a.4.6.2,c.23.1.1	123326,123327
1bea	127	51.81		
2dbnA	461	54.18		
1wj6A	101	54.43	d.15.2.2	114693
1yoeA	322	55.83		
1t1jA	125	57.85	c.23.14.2	106249
2jobA	102	58.16		
2ba3A	51	59.12		
2pn6A	150	60.10		
1zbmA	280	63.00	c.94.1.1	124858
2hqhE	25	65.21		
1i4nA	251	70.46	c.1.2.4	71114
2vqeT	106	70.62		
1bavA	309	75.65	c.56.5.1	33806
2jgpA	520	76.91		
2qp2A	511	78.86		
1vdlA	80	80.64	a.5.2.1	108528
1d2fA	390	82.77	c.67.1.3	34411
2qhoB	53	82.81		
2b69A	343	88.65	c.2.1.2	127974
1lf6A	684	89.30	a.102.1.5,b.30.5.5	77918,77919