# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.004596	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.004890		
2cpgA	45	0.2020	a.43.1.3	17455
2gpeA	52	0.7798		
1p94A	76	1.495	a.43.1.3	94380
2q2kA	70	3.049		
2k29A	53	3.611		
1n69A	81	4.858	a.64.1.3	80118
2an7A	83	5.600		
1x93A	55	9.188		
1n3hA	207	14.08	b.55.1.2	91564
2bsqE	77	17.95	a.43.1.8	129102
3bqpA	80	21.44		
2qkmB	266	22.81		
1uz3A	102	23.27		
1utuA	108	23.56		
1k4mA	213	26.31	c.26.1.3	77258
1yioA	208	33.12	a.4.6.2,c.23.1.1	123326,123327
2gs4A	166	39.95	a.25.1.4	135575
1qynA	153	42.86	d.33.1.1	96597
2dbnA	461	43.84		
1t1jA	125	45.65	c.23.14.2	106249
1wj6A	101	51.33	d.15.2.2	114693
1yoeA	322	53.94		
2p1aA	154	54.13		
2d7eA	105	56.05		
1jmxA	494	56.16	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2jobA	102	62.56		
1bea	127	62.62		
2hqhE	25	63.86		
2qp2A	511	70.01		
1si6X	282	71.54	d.151.1.2	118968
2ba3A	51	75.45		
1d2fA	390	77.05	c.67.1.3	34411
1zbmA	280	79.46	c.94.1.1	124858
2vqeT	106	81.12		
1vdlA	80	81.88	a.5.2.1	108528
1q9jA	422	82.19	c.43.1.2,c.43.1.2	104590,104591
2bkfA	87	83.48	d.15.2.2	128699
2d7dB	40	87.98		
2qhoB	53	88.31		
1hrhA	136	89.60	c.55.3.1	33577
1bavA	309	89.89	c.56.5.1	33806