# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.005429		
2bj7A	138	0.005466	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.1979	a.43.1.3	17455
2gpeA	52	0.7012		
1p94A	76	1.446	a.43.1.3	94380
2q2kA	70	3.221		
1n69A	81	3.981	a.64.1.3	80118
2k29A	53	4.598		
2an7A	83	6.625		
1x93A	55	10.27		
1n3hA	207	14.14	b.55.1.2	91564
2bsqE	77	17.10	a.43.1.8	129102
3bqpA	80	17.74		
1yioA	208	29.89	a.4.6.2,c.23.1.1	123326,123327
1uz3A	102	30.95		
1k4mA	213	31.45	c.26.1.3	77258
1utuA	108	34.92		
2gs4A	166	37.08	a.25.1.4	135575
2qkmB	266	39.16		
2dbnA	461	41.07		
2d7eA	105	50.72		
1bea	127	53.02		
1t1jA	125	54.13	c.23.14.2	106249
2hqhE	25	56.12		
1qynA	153	56.61	d.33.1.1	96597
1yoeA	322	56.85		
1jmxA	494	59.32	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2jobA	102	60.81		
2p1aA	154	63.53		
2vqeT	106	64.42		
1d2fA	390	70.62	c.67.1.3	34411
1zbmA	280	74.05	c.94.1.1	124858
1q9jA	422	74.50	c.43.1.2,c.43.1.2	104590,104591
2ba3A	51	76.46		
2pn6A	150	80.24		
2qhoB	53	82.81		
2masA	314	84.57	c.70.1.1	34810
1vkmA	297	85.31	c.138.1.1	108670
1i4nA	251	86.25	c.1.2.4	71114
1hrhA	136	89.14	c.55.3.1	33577
1vdlA	80	89.44	a.5.2.1	108528