# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.2804		
2bj7A	138	0.6344	a.43.1.3,d.58.18.4	128608,128609
2gpeA	52	2.520		
2cpgA	45	2.770	a.43.1.3	17455
1uz3A	102	5.407		
1p94A	76	9.510	a.43.1.3	94380
1utuA	108	9.756		
1n69A	81	10.32	a.64.1.3	80118
1yoeA	322	11.07		
2d7eA	105	11.48		
2qkmB	266	16.04		
2masA	314	18.55	c.70.1.1	34810
2bsqE	77	19.31	a.43.1.8	129102
2dobA	83	22.84		
3bqpA	80	26.19		
2an7A	83	27.65		
2cihA	183	28.42		
1k3xA	262	29.18	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1gewA	356	31.97	c.67.1.1	60470
1q2wA	308	34.61	b.47.1.4	88355
1q8fA	313	34.71	c.70.1.1	96203
2qypA	91	35.95		
2h2zA	306	45.29		
1vp6A	138	46.79	b.82.3.2	113939
2amdA	311	53.43		
1cd31	152	55.13		
1vm6A	228	55.31	d.81.1.3,c.2.1.3	108877,118631
3bk6A	188	56.74		
2v95A	371	58.17		
1zbmA	280	58.62	c.94.1.1	124858
1auiB	169	58.91	a.39.1.5	17325
1w8iA	156	59.60	c.120.1.1	114368
3cnqP	80	60.68		
1sz2A	332	61.27	c.55.1.7	112169
1k4mA	213	63.41	c.26.1.3	77258
2dbnA	461	64.79		
2gauA	232	66.49	a.4.5.4,b.82.3.2	134894,134895
2yviA	111	69.50		
1fjrA	195	69.79	b.102.1.1	59855
1t15A	214	70.04	c.15.1.3,c.15.1.3	99067,99068
1avsA	90	70.70	a.39.1.5	17226
2q2kA	70	74.15		
2za8A	167	74.39		
2k29A	53	77.40		
1m12A	84	79.02	a.64.1.1	84745
1qtwA	285	79.53	c.1.15.1	29392
2qp2A	511	79.60		
1p4xA	250	80.41	a.4.5.28,a.4.5.28	87784,87785
1zymA	258	80.42	a.60.10.1,c.8.1.2	18110,30705
2nteA	210	86.40		
2ba3A	51	87.00		
1zxzA	197	87.93