# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.04822		
2bj7A	138	0.06030	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.4104	a.43.1.3	17455
2gpeA	52	0.9447		
1p94A	76	2.300	a.43.1.3	94380
2q2kA	70	9.289		
2k29A	53	9.444		
1n69A	81	12.53	a.64.1.3	80118
2an7A	83	12.81		
2bsqE	77	13.56	a.43.1.8	129102
1k4mA	213	23.45	c.26.1.3	77258
2d7eA	105	34.66		
1qynA	153	35.40	d.33.1.1	96597
2ba3A	51	35.65		
1jmxA	494	40.48	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1q9jA	422	43.24	c.43.1.2,c.43.1.2	104590,104591
1yioA	208	43.95	a.4.6.2,c.23.1.1	123326,123327
3bqpA	80	45.63		
2qkmB	266	49.65		
1kamA	194	49.87	c.26.1.3	72254
1n3hA	207	51.17	b.55.1.2	91564
1svmA	377	57.81	c.37.1.20	112126
2p1aA	154	60.25		
2jgpA	520	64.15		
2egtA	132	64.28		
1utuA	108	65.11		
2hqhE	25	70.32		
2vqeT	106	70.39		
1x93A	55	71.00		
2jobA	102	72.00		
1uz3A	102	72.58		
2c5aA	379	72.98	c.2.1.2	129894
2b69A	343	78.51	c.2.1.2	127974
1yumA	242	78.67		
1bea	127	80.64		
1yoeA	322	81.93		
1e5pA	151	89.08	b.60.1.1	59272