# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ca9A 148 0.009230 2bj7A 138 0.01735 a.43.1.3,d.58.18.4 128608,128609 2cpgA 45 0.3108 a.43.1.3 17455 2gpeA 52 0.4966 1n69A 81 2.817 a.64.1.3 80118 2a2nA 176 3.905 b.62.1.1 126041 1di1A 300 4.376 a.128.1.4 19446 2q2kA 70 5.459 2gu3A 136 6.071 2paqA 201 7.570 a.211.1.1 139643 1yndA 165 7.850 b.62.1.1 123721 1hy7A 173 9.120 d.92.1.11 65957 1qwkA 317 10.31 c.1.7.1 96482 2ch5A 347 10.36 c.55.1.5,c.55.1.5 130453,130454 2bsqE 77 10.59 a.43.1.8 129102 2c5aA 379 11.07 c.2.1.2 129894 2pgeA 377 12.12 1zkcA 197 12.53 b.62.1.1 125182 2k29A 53 12.63 2cfeA 162 13.16 b.62.1.1 130375 1umpA 631 14.09 a.102.4.2,a.102.4.2 99619,99620 1k4mA 213 17.19 c.26.1.3 77258 2an7A 83 17.39 1vjfA 180 18.20 d.116.1.1 100809 1exrA 148 18.70 a.39.1.5 17299 1awqA 164 19.25 b.62.1.1 27461 3bqpA 80 20.70 1h0pA 182 20.88 b.62.1.1 76450 2rmcA 182 23.25 b.62.1.1 27491 1ti6A 875 25.42 b.52.2.2,c.81.1.1 106974,106975 2eplX 627 25.55 2cmtA 172 26.53 1sat 471 28.19 2qkmB 266 28.53 2bitX 165 28.61 b.62.1.1 128590 2amdA 311 28.82 1reqB 637 28.98 c.1.19.1,c.23.6.1 29621,31248 2fkzA 155 29.96 a.25.1.1 133688 2j5cA 569 31.57 1uz3A 102 33.05 1fr2A 86 35.41 a.28.2.1 83256 1qynA 153 36.18 d.33.1.1 96597 2f2hA 773 38.85 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1kamA 194 39.78 c.26.1.3 72254 1p94A 76 40.98 a.43.1.3 94380 2b5tI 432 41.96 e.1.1.1 127905 1ta8A 332 43.00 d.142.2.2 112375 2qryA 330 43.92 1x93A 55 45.67 2p1aA 154 45.82 1n25A 368 46.07 c.37.1.20 85264 1xo7A 166 46.20 b.62.1.1 115694 1q2wA 308 46.41 b.47.1.4 88355 1m2kA 249 46.53 c.31.1.5 84754 1yobA 179 46.89 c.23.5.1 123776 2zadA 345 47.53 1utuA 108 49.59 2hrzA 342 49.75 2z99A 219 50.31 1wvgA 359 52.32 c.2.1.2 121339 2zblA 421 52.81 1ymgA 263 52.83 2d7eA 105 53.30 1ggzA 148 54.21 a.39.1.5 70176 1l9cA 389 56.88 c.3.1.2,d.16.1.3 77815,77816 2bkfA 87 58.29 d.15.2.2 128699 1n3hA 207 58.45 b.55.1.2 91564 1pjjA 271 59.11 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 2v95A 371 59.92 1euvA 221 62.94 d.3.1.7 37133 1sqgA 429 64.77 a.79.1.3,c.66.1.38 105912,105913 1li5A 461 65.91 a.27.1.1,c.26.1.1 73912,73913 1z7bA 358 66.26 c.2.1.2 124599 2ipiA 521 69.20 1iybA 208 69.72 d.124.1.1 90720 1yumA 242 69.92 1khtA 192 71.24 c.37.1.1 84401 1svmA 377 72.41 c.37.1.20 112126 2uwxA 494 72.75 e.3.1.1 140002 2ds3A 761 73.11 1pc3A 350 73.34 c.94.1.1 104102 1ea9C 583 73.80 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1eg2A 319 74.02 c.66.1.11 34249 1dhpA 292 74.36 c.1.10.1 29097 1y8cA 246 74.58 c.66.1.43 116563 1j99A 293 75.79 c.37.1.5 71618 3bgaA 1010 76.73 3ci0K 298 77.65 2hhjA 267 77.98 c.60.1.1 136497 1mtzA 293 79.47 c.69.1.7 79467 1gkpA 458 79.61 b.92.1.3,c.1.9.6 70231,70232 2r2cA 183 80.43 1fmjA 351 80.49 c.37.1.5 59879 1t15A 214 80.58 c.15.1.3,c.15.1.3 99067,99068 1k3xA 262 81.89 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2gfpA 375 82.39 3d2lA 243 82.79 2pmvA 399 82.95 1h2eA 207 82.95 c.60.1.1 70857 1wdcB 156 83.57 a.39.1.5 17302 1qwgA 251 84.10 c.1.27.1 96473 2purA 292 86.97 2ragA 417 88.42 1satA 471 88.43 b.80.7.1,d.92.1.6 28014,40300