# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.02297		
2bj7A	138	0.04914	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.4377	a.43.1.3	17455
2gpeA	52	0.9617		
1p94A	76	2.238	a.43.1.3	94380
2q2kA	70	7.651		
1n69A	81	10.34	a.64.1.3	80118
2bsqE	77	14.66	a.43.1.8	129102
2an7A	83	15.27		
2k29A	53	17.67		
2qkmB	266	22.39		
1n3hA	207	30.68	b.55.1.2	91564
1qynA	153	35.10	d.33.1.1	96597
3bqpA	80	37.51		
1jmxA	494	41.22	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1k4mA	213	43.67	c.26.1.3	77258
2p1aA	154	46.85		
1utuA	108	47.14		
1uz3A	102	48.93		
1yioA	208	56.11	a.4.6.2,c.23.1.1	123326,123327
2gs4A	166	57.92	a.25.1.4	135575
1yoeA	322	58.15		
1xwiA	322	59.74		
2d7eA	105	60.19		
1q9jA	422	66.48	c.43.1.2,c.43.1.2	104590,104591
2ba3A	51	66.84		
2vqeT	106	67.24		
1si6X	282	69.14	d.151.1.2	118968
1di1A	300	70.41	a.128.1.4	19446
2hqhE	25	71.11		
1svmA	377	71.86	c.37.1.20	112126
2qp2A	511	72.49		
1bea	127	75.13		
1zbmA	280	75.75	c.94.1.1	124858
2dbnA	461	76.47		
2ct9A	208	77.73		
2amdA	311	80.11		
2b69A	343	82.72	c.2.1.2	127974
1i4nA	251	83.54	c.1.2.4	71114
2jobA	102	87.02		
1x93A	55	87.72