# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.007980		
2bj7A	138	0.01154	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.2488	a.43.1.3	17455
2gpeA	52	0.6622		
1p94A	76	1.792	a.43.1.3	94380
2q2kA	70	2.624		
2an7A	83	5.314		
1n69A	81	5.756	a.64.1.3	80118
2k29A	53	11.82		
1x93A	55	16.43		
3bqpA	80	20.90		
2qkmB	266	21.25		
1n3hA	207	22.55	b.55.1.2	91564
2bsqE	77	26.51	a.43.1.8	129102
2gs4A	166	28.23	a.25.1.4	135575
1zbmA	280	35.09	c.94.1.1	124858
1k4mA	213	35.59	c.26.1.3	77258
2jobA	102	36.43		
2qp2A	511	38.45		
1m12A	84	38.66	a.64.1.1	84745
1qynA	153	39.95	d.33.1.1	96597
1si6X	282	41.64	d.151.1.2	118968
2d7eA	105	41.75		
2vqeT	106	42.12		
1uz3A	102	49.12		
1utuA	108	49.52		
1q9jA	422	54.26	c.43.1.2,c.43.1.2	104590,104591
1bea	127	57.69		
1yioA	208	60.09	a.4.6.2,c.23.1.1	123326,123327
1jmxA	494	62.02	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1bavA	309	66.91	c.56.5.1	33806
1xwiA	322	70.09		
1yoeA	322	73.71		
2cr9A	139	74.78	d.297.1.1	130735
2b69A	343	76.74	c.2.1.2	127974
1kamA	194	80.08	c.26.1.3	72254
1vdlA	80	80.85	a.5.2.1	108528
1svmA	377	81.36	c.37.1.20	112126
2hqhE	25	87.31		
1qw2A	102	88.41	d.249.1.1	96456