# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.003773		
2bj7A	138	0.006388	a.43.1.3,d.58.18.4	128608,128609
2cpgA	45	0.1532	a.43.1.3	17455
2gpeA	52	0.3168		
1p94A	76	1.412	a.43.1.3	94380
2an7A	83	2.608		
2q2kA	70	3.015		
1n69A	81	4.229	a.64.1.3	80118
2k29A	53	6.772		
3bqpA	80	13.75		
2bsqE	77	15.78	a.43.1.8	129102
1x93A	55	16.64		
2qkmB	266	19.01		
2d7eA	105	20.01		
1k4mA	213	21.78	c.26.1.3	77258
1utuA	108	26.42		
1uz3A	102	28.18		
2gs4A	166	28.43	a.25.1.4	135575
2vqeT	106	32.10		
1zbmA	280	33.19	c.94.1.1	124858
2jobA	102	34.18		
2qp2A	511	34.90		
1n3hA	207	38.44	b.55.1.2	91564
1svmA	377	38.97	c.37.1.20	112126
1yoeA	322	40.87		
1m12A	84	41.88	a.64.1.1	84745
1q9jA	422	43.05	c.43.1.2,c.43.1.2	104590,104591
2masA	314	43.90	c.70.1.1	34810
2hqhE	25	53.93		
1si6X	282	54.30	d.151.1.2	118968
2b69A	343	55.67	c.2.1.2	127974
1vdlA	80	56.49	a.5.2.1	108528
1xwiA	322	58.49		
1jmxA	494	59.29	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2gyqA	175	60.29	a.25.1.4	135863
1qynA	153	60.45	d.33.1.1	96597
1k3xA	262	68.32	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1yioA	208	71.38	a.4.6.2,c.23.1.1	123326,123327
2hsaA	402	74.30		
1qveA	126	74.96	d.24.1.1	104594
2ba3A	51	76.18		
2p1aA	154	78.90		
1lf6A	684	82.14	a.102.1.5,b.30.5.5	77918,77919
1fx3A	169	87.21	d.33.1.1	38524
1kamA	194	87.65	c.26.1.3	72254
1uklC	61	88.71	a.38.1.1	99495