# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bj7A	138	0.006788	a.43.1.3,d.58.18.4	128608,128609
2ca9A	148	0.007789		
2cpgA	45	0.1224	a.43.1.3	17455
2gpeA	52	0.3242		
1p94A	76	0.7406	a.43.1.3	94380
2q2kA	70	2.749		
2an7A	83	3.488		
1n69A	81	4.563	a.64.1.3	80118
2k29A	53	5.378		
1x93A	55	6.176		
2bsqE	77	10.96	a.43.1.8	129102
3bqpA	80	15.85		
1q9jA	422	16.30	c.43.1.2,c.43.1.2	104590,104591
1k4mA	213	17.83	c.26.1.3	77258
2d7eA	105	25.44		
1svmA	377	26.18	c.37.1.20	112126
1n3hA	207	31.78	b.55.1.2	91564
2qkmB	266	32.46		
2jobA	102	35.04		
1uz3A	102	39.79		
1yioA	208	49.01	a.4.6.2,c.23.1.1	123326,123327
2ba3A	51	51.90		
1utuA	108	54.01		
2cr9A	139	58.44	d.297.1.1	130735
1yoeA	322	58.82		
1m12A	84	59.67	a.64.1.1	84745
1xwiA	322	59.74		
1jmxA	494	60.14	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
2jgpA	520	62.87		
2qp2A	511	70.35		
1qynA	153	71.62	d.33.1.1	96597
1qveA	126	72.16	d.24.1.1	104594
2hsaA	402	72.75		
1l5aA	436	73.31	c.43.1.2,c.43.1.2	75923,75924
2hqhE	25	73.93		
1zbmA	280	74.08	c.94.1.1	124858
2vqeT	106	76.51		
2masA	314	77.06	c.70.1.1	34810
1bavA	309	84.00	c.56.5.1	33806
1z7bA	358	84.82	c.2.1.2	124599
1si6X	282	87.14	d.151.1.2	118968
2abbA	364	88.72	c.1.4.1	126517
1uklC	61	88.88	a.38.1.1	99495
1n25A	368	88.96	c.37.1.20	85264
2gs4A	166	89.49	a.25.1.4	135575