# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	0.6780		
2bj7A	138	5.172	a.43.1.3,d.58.18.4	128608,128609
2vqeT	106	13.27		
2p1aA	154	13.29		
2cpgA	45	16.12	a.43.1.3	17455
1si6X	282	16.23	d.151.1.2	118968
1uz3A	102	21.40		
1d2fA	390	23.74	c.67.1.3	34411
2uubT	106	24.52	a.7.6.1	139951
2masA	314	36.45	c.70.1.1	34810
1yoeA	322	37.78		
1k4mA	213	38.00	c.26.1.3	77258
2ifsA	169	38.08		
1kamA	194	57.14	c.26.1.3	72254
2cihA	183	58.90		
1u5kA	244	59.41	b.40.4.13,g.45.1.2	113038,113039
2nxcA	254	60.66	c.66.1.39	138739
1aoa	275	61.84		
1sz2A	332	66.83	c.55.1.7	112169
2dkhA	639	67.47		
1utuA	108	71.21		
2gpeA	52	73.44		
1k2eA	156	75.58	d.113.1.1	72010
1q2wA	308	77.42	b.47.1.4	88355
2amdA	311	78.45		
1lc5A	364	80.61	c.67.1.1	73827
2b69A	343	85.31	c.2.1.2	127974
1tx9A	151	85.92	a.84.1.1	119383