# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ca9A	148	1.110		
2bj7A	138	2.526	a.43.1.3,d.58.18.4	128608,128609
1n69A	81	9.944	a.64.1.3	80118
2cpgA	45	12.65	a.43.1.3	17455
2gpeA	52	15.48		
1k4mA	213	17.27	c.26.1.3	77258
1uz3A	102	22.80		
3bqpA	80	23.47		
2masA	314	26.08	c.70.1.1	34810
1q9jA	422	29.23	c.43.1.2,c.43.1.2	104590,104591
1yoeA	322	32.95		
1svmA	377	33.23	c.37.1.20	112126
1m12A	84	34.91	a.64.1.1	84745
2qp2A	511	35.50		
1kamA	194	43.87	c.26.1.3	72254
1zxzA	197	50.04		
1utuA	108	50.10		
2qypA	91	50.47		
2vqeT	106	55.33		
2gs4A	166	57.09	a.25.1.4	135575
2dobA	83	61.09		
1zbmA	280	62.78	c.94.1.1	124858
3c96A	415	64.62		
2b69A	343	71.41	c.2.1.2	127974
2qh5A	308	73.50		
1nuuA	252	73.92	c.26.1.3	86209
1w6kA	732	74.28	a.102.4.2,a.102.4.2	114271,114272
1vqsA	116	75.64	d.58.4.13	114019
2z1yA	397	75.71		
2d7eA	105	76.39		
2i7aA	174	78.14		
1yumA	242	80.69		
1or0A	160	86.56	d.153.1.2	93445
2rkvA	451	86.79		
1si6X	282	88.74	d.151.1.2	118968