# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bj7A 138 0.04938 a.43.1.3,d.58.18.4 128608,128609 2ca9A 148 0.4493 2d7eA 105 0.7857 2gpeA 52 2.880 1q2wA 308 3.871 b.47.1.4 88355 2h2zA 306 4.293 1tc3C 51 4.445 a.4.1.2 16025 2amdA 311 6.253 1zm7A 230 7.180 1vh4A 435 7.393 b.80.6.1 100640 1gewA 356 8.413 c.67.1.1 60470 1oe0A 230 9.182 c.37.1.1 92788 2v95A 371 9.303 2bsqE 77 9.464 a.43.1.8 129102 2vp4A 230 9.485 1uz3A 102 9.844 2opwA 291 10.38 1p94A 76 11.22 a.43.1.3 94380 1yxaA 398 11.72 1oxkB 134 13.11 c.23.1.1 93691 1utuA 108 13.32 1x93A 55 15.21 2o6lA 170 16.79 2cpgA 45 18.53 a.43.1.3 17455 1z85A 234 18.63 1hcrA 52 20.86 a.4.1.2 16020 2an7A 83 24.24 2o6yA 521 26.12 1r1mA 164 26.16 d.79.7.1 96820 2eo4A 149 26.72 2z20A 432 26.78 2bfdA 400 27.16 2o71A 115 29.38 1pp7U 131 30.70 a.4.5.44 94973 1tmyA 120 33.16 c.23.1.1 31083 2ijeS 240 33.52 1bazA 53 34.37 a.43.1.1 17421 1qs0A 407 34.66 c.36.1.11 31829 1vb3A 428 35.49 c.79.1.1 119942 2hp7A 183 36.13 2oikA 154 36.29 1jhsA 188 36.38 d.107.1.1 84172 2k29A 53 36.84 2d5xA 141 39.28 a.1.1.2 131282 2prvA 153 41.75 1u8tA 129 41.78 c.23.1.1 113192 2fyxA 143 42.43 d.58.57.1 134411 1qy1A 174 42.92 b.60.1.1 96568 1eq6A 189 43.01 d.107.1.1 40796 1yoeA 322 43.14 1jkoC 52 43.73 a.4.1.2 66809 1q7sA 117 44.93 c.131.1.1 96055 3bciA 186 45.61 1aoa 275 46.12 1l0bA 229 47.60 c.15.1.3,c.15.1.3 73391,73392 1i4uA 181 48.43 b.60.1.1 61732 2jnsA 90 48.60 1go3F 107 50.22 a.60.8.2 65407 1u14A 172 51.31 c.51.4.3 107579 1nmuB 104 52.05 d.79.3.1 80666 1fqiA 147 52.05 a.91.1.1 18542 1yrbA 262 53.69 c.37.1.10 123915 2ba3A 51 54.72 1x31B 404 55.37 2yviA 111 55.51 1mbe 53 57.27 1b8fA 509 57.84 a.127.1.2 19434 1jnyA 435 58.15 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1aj8A 371 59.56 a.103.1.1 18900 1x7yA 400 60.60 c.36.1.11 114944 1ezvB 352 60.94 d.185.1.1,d.185.1.1 59543,59544 2qkmB 266 61.62 1i06A 180 62.16 b.60.1.1 27131 3c3mA 138 62.92 3b9fI 395 63.41 1lf7A 182 64.24 b.60.1.1 73878 2cruA 118 64.79 a.5.6.1 130742 1jv4A 162 65.56 b.60.1.1 67343 1dzlA 505 66.28 b.121.6.1 23586 2masA 314 67.24 c.70.1.1 34810 2nteA 210 67.82 1uzxA 169 68.41 d.20.1.2 100238 1tkeA 224 68.70 d.15.10.1,d.67.1.1 112470,112471 1v1rA 400 69.60 c.36.1.11 108272 1t15A 214 69.71 c.15.1.3,c.15.1.3 99067,99068 2qhoB 53 69.81 2ol2A 395 71.64 1ojqA 212 71.94 d.166.1.1 93146 1qwdA 177 73.50 b.60.1.1 96471 2zc2A 78 74.51 1g61A 228 74.67 d.126.1.1 41126 2qsfX 171 75.85 2a11A 242 75.92 1u2eA 289 76.10 2o8iA 165 76.15 2d5vA 164 77.74 1qf6A 642 78.04 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1wn2A 121 78.57 1p9qC 256 79.11 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 2r25B 133 79.98 1rypH 205 80.16 d.153.1.4 41876 2h4pA 394 81.12 1fg7A 356 83.89 c.67.1.1 59819 2pagA 135 84.57 2ohyA 539 85.36 1gcvB 136 85.64 a.1.1.2 15589 1zndA 174 85.70 b.60.1.1 125380 1gkmA 509 85.86 a.127.1.2 70228 1h7mA 102 86.93 d.79.3.1 83485 1tdhA 364 87.34 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 2h6eA 344 88.56 2a0iA 330 89.16 2ccqA 99 89.19 d.314.1.1 130252