This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 1 NATAA M A 2 2 NATAA N A 3 3 NATAA S A 4 4 NATAA L A 5 5 NATAA A A 6 6 NATAA G A 7 7 NATAA I A 8 8 NATAA D A 9 9 NATAA M A 10 10 NATAA G A 11 11 NATAA R A 12 12 NATAA I A 13 13 NATAA L A 14 14 NATAA L A 15 15 NATAA D A 16 16 NATAA L A 17 17 NATAA S A 18 18 NATAA N A 19 19 NATAA E A 20 20 NATAA V A 21 21 NATAA I A 22 22 NATAA K A 23 23 NATAA Q A 24 24 NATAA L A 25 25 NATAA D A 26 26 NATAA D A 27 27 NATAA L A 28 28 NATAA E A 29 29 NATAA V A 30 30 NATAA Q A 31 31 NATAA R A 32 32 NATAA N A 33 33 NATAA L A 34 34 NATRO P A 35 35 NATAA R A 36 36 NATAA A A 37 37 NATAA D A 38 38 NATAA L A 39 39 NATAA L A 40 40 NATAA R A 41 41 NATAA E A 42 42 NATAA A A 43 43 NATAA V A 44 44 NATAA D A 45 45 NATAA Q A 46 46 NATAA Y A 47 47 NATAA L A 48 48 NATAA I A 49 49 NATAA N A 50 50 NATAA Q A 51 51 NATAA S A 52 52 NATAA Q A 53 53 NATAA T A 54 54 NATAA A A 55 55 NATAA R A 56 56 NATAA T A 57 57 NATAA S A 58 58 NATAA V A 59 59 NATRO P A 60 60 NATAA G A 61 61 NATAA I A 62 62 NATAA W A 63 63 NATAA Q A 64 64 NATAA G A 65 65 NATRO C A 66 66 NATAA E A 67 67 NATAA E A 68 68 NATAA D A 69 69 NATAA G A 70 70 NATAA V A 71 71 NATAA E A 72 72 NATAA Y A 73 73 NATAA Q A 74 74 NATAA R A 75 75 NATAA K A 76 76 NATAA L A 77 77 NATAA R A 78 78 NATAA E A 79 79 NATAA E A 80 80 NATAA W