# TARGET T0473 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0473.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.571 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.019 0.013 0.352 0.014 0.008 0.005 0.002 0.001 0.021 0.144 0.018 0.364 0.041 2 K 0.015 0.021 0.557 0.002 0.005 0.003 0.007 0.001 0.027 0.058 0.024 0.039 0.240 3 I 0.007 0.066 0.518 0.004 0.010 0.004 0.002 0.001 0.015 0.089 0.019 0.126 0.140 4 T 0.001 0.004 0.914 0.002 0.003 0.002 0.001 0.001 0.007 0.030 0.010 0.010 0.016 5 K 0.001 0.003 0.105 0.017 0.202 0.097 0.001 0.001 0.009 0.151 0.383 0.010 0.022 6 D 0.001 0.006 0.116 0.004 0.144 0.095 0.001 0.001 0.019 0.090 0.506 0.008 0.008 7 M 0.005 0.029 0.523 0.003 0.039 0.097 0.004 0.003 0.026 0.152 0.020 0.058 0.040 8 I 0.011 0.059 0.474 0.004 0.028 0.202 0.006 0.003 0.031 0.052 0.025 0.031 0.076 9 I 0.003 0.004 0.065 0.002 0.044 0.822 0.001 0.002 0.007 0.009 0.018 0.006 0.016 10 A 0.001 0.001 0.013 0.006 0.035 0.918 0.001 0.001 0.004 0.005 0.011 0.003 0.003 11 D 0.002 0.001 0.006 0.001 0.043 0.928 0.001 0.001 0.002 0.002 0.008 0.003 0.005 12 V 0.001 0.001 0.006 0.001 0.040 0.929 0.001 0.001 0.002 0.001 0.012 0.002 0.005 13 L 0.003 0.002 0.021 0.005 0.053 0.813 0.001 0.001 0.008 0.005 0.082 0.005 0.004 14 Q 0.003 0.003 0.031 0.001 0.092 0.656 0.001 0.001 0.005 0.013 0.184 0.005 0.008 15 M 0.001 0.011 0.091 0.001 0.023 0.566 0.001 0.001 0.004 0.074 0.216 0.002 0.008 16 D 0.001 0.006 0.583 0.001 0.007 0.126 0.001 0.001 0.002 0.216 0.050 0.007 0.001 17 R 0.001 0.002 0.113 0.001 0.062 0.443 0.001 0.001 0.001 0.058 0.318 0.001 0.002 18 G 0.001 0.001 0.042 0.001 0.057 0.308 0.001 0.001 0.001 0.068 0.522 0.001 0.001 19 T 0.001 0.006 0.132 0.001 0.146 0.563 0.001 0.001 0.003 0.086 0.056 0.001 0.006 20 A 0.001 0.002 0.055 0.001 0.024 0.878 0.001 0.001 0.003 0.024 0.006 0.003 0.002 21 P 0.001 0.001 0.008 0.001 0.032 0.938 0.001 0.001 0.002 0.004 0.006 0.001 0.005 22 I 0.002 0.001 0.004 0.001 0.052 0.917 0.001 0.001 0.002 0.001 0.011 0.006 0.003 23 F 0.002 0.001 0.003 0.001 0.023 0.927 0.001 0.001 0.006 0.001 0.029 0.001 0.005 24 I 0.010 0.003 0.014 0.004 0.043 0.831 0.001 0.002 0.004 0.006 0.068 0.009 0.006 25 N 0.003 0.001 0.025 0.001 0.047 0.753 0.001 0.001 0.003 0.015 0.142 0.002 0.005 26 N 0.001 0.001 0.024 0.003 0.012 0.178 0.001 0.001 0.001 0.052 0.726 0.002 0.001 27 G 0.001 0.003 0.123 0.002 0.009 0.050 0.001 0.001 0.003 0.107 0.695 0.004 0.002 28 M 0.002 0.028 0.532 0.001 0.029 0.061 0.002 0.004 0.016 0.167 0.126 0.008 0.023 29 H 0.004 0.079 0.466 0.011 0.040 0.053 0.004 0.008 0.043 0.153 0.096 0.021 0.023 30 C 0.003 0.022 0.414 0.010 0.121 0.088 0.005 0.009 0.055 0.106 0.115 0.013 0.037 31 L 0.003 0.019 0.192 0.024 0.091 0.074 0.006 0.007 0.044 0.114 0.401 0.013 0.014 32 G 0.003 0.031 0.243 0.007 0.045 0.038 0.003 0.004 0.024 0.307 0.265 0.009 0.021 33 C 0.002 0.019 0.565 0.003 0.026 0.028 0.001 0.002 0.012 0.270 0.030 0.029 0.013 34 P 0.002 0.037 0.279 0.004 0.116 0.130 0.002 0.003 0.021 0.133 0.233 0.007 0.033 35 S 0.002 0.024 0.148 0.007 0.119 0.190 0.001 0.002 0.012 0.126 0.349 0.009 0.011 36 S 0.002 0.020 0.277 0.005 0.127 0.201 0.001 0.002 0.007 0.158 0.166 0.020 0.013 37 M 0.001 0.012 0.229 0.002 0.061 0.210 0.001 0.001 0.009 0.096 0.367 0.003 0.009 38 G 0.001 0.010 0.132 0.002 0.033 0.483 0.001 0.001 0.004 0.136 0.187 0.005 0.005 39 E 0.001 0.008 0.103 0.001 0.029 0.684 0.001 0.001 0.001 0.117 0.038 0.009 0.007 40 S 0.001 0.010 0.109 0.001 0.045 0.743 0.001 0.001 0.001 0.041 0.034 0.005 0.011 41 I 0.001 0.001 0.008 0.001 0.017 0.963 0.001 0.001 0.001 0.003 0.008 0.001 0.001 42 E 0.001 0.001 0.002 0.001 0.016 0.976 0.001 0.001 0.001 0.001 0.004 0.001 0.001 43 D 0.001 0.001 0.001 0.001 0.011 0.983 0.001 0.001 0.001 0.001 0.004 0.001 0.001 44 A 0.001 0.001 0.001 0.001 0.006 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.001 45 C 0.001 0.001 0.002 0.001 0.011 0.958 0.001 0.001 0.001 0.001 0.026 0.001 0.001 46 A 0.001 0.001 0.005 0.001 0.025 0.909 0.001 0.001 0.001 0.003 0.052 0.001 0.002 47 V 0.001 0.001 0.019 0.001 0.026 0.886 0.001 0.001 0.001 0.008 0.054 0.001 0.002 48 H 0.001 0.001 0.053 0.002 0.016 0.336 0.001 0.001 0.006 0.054 0.528 0.002 0.001 49 G 0.001 0.003 0.178 0.001 0.004 0.101 0.001 0.001 0.009 0.106 0.592 0.002 0.003 50 I 0.001 0.037 0.715 0.001 0.001 0.060 0.001 0.001 0.007 0.149 0.013 0.010 0.006 51 D 0.001 0.008 0.888 0.001 0.002 0.059 0.001 0.001 0.006 0.026 0.002 0.002 0.007 52 A 0.001 0.001 0.003 0.001 0.056 0.938 0.001 0.001 0.001 0.001 0.002 0.001 0.001 53 D 0.001 0.001 0.001 0.001 0.044 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 K 0.001 0.001 0.001 0.001 0.020 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 K 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 58 E 0.001 0.001 0.001 0.001 0.002 0.963 0.001 0.001 0.001 0.001 0.033 0.001 0.001 59 L 0.001 0.001 0.004 0.001 0.002 0.981 0.001 0.001 0.001 0.004 0.010 0.001 0.001 60 N 0.001 0.001 0.016 0.001 0.008 0.949 0.001 0.001 0.001 0.006 0.020 0.001 0.001 61 E 0.001 0.001 0.003 0.001 0.028 0.940 0.001 0.001 0.001 0.003 0.026 0.001 0.001 62 Y 0.001 0.001 0.007 0.001 0.024 0.926 0.001 0.001 0.001 0.005 0.037 0.001 0.001 63 F 0.001 0.002 0.032 0.001 0.053 0.868 0.001 0.001 0.002 0.008 0.033 0.001 0.001 64 E 0.001 0.002 0.052 0.001 0.063 0.788 0.001 0.001 0.004 0.017 0.072 0.001 0.001 65 K 0.001 0.002 0.051 0.001 0.099 0.668 0.001 0.001 0.004 0.033 0.136 0.001 0.003 66 K 0.001 0.007 0.149 0.001 0.065 0.523 0.001 0.001 0.008 0.099 0.133 0.009 0.004 67 E 0.001 0.020 0.456 0.001 0.031 0.208 0.001 0.001 0.014 0.131 0.111 0.006 0.018 68 V 0.001 0.011 0.669 0.001 0.024 0.094 0.001 0.001 0.009 0.117 0.057 0.008 0.008