# TARGET T0473 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0473.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.571 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.112 0.005 0.303 0.523 0.001 0.018 0.004 0.004 0.003 0.002 0.003 0.003 0.006 0.001 0.003 0.008 2 K 0.017 0.045 0.473 0.401 0.008 0.034 0.001 0.001 0.003 0.001 0.002 0.002 0.002 0.001 0.001 0.009 3 I 0.015 0.018 0.023 0.837 0.013 0.068 0.001 0.006 0.001 0.001 0.009 0.006 0.002 0.001 0.001 0.001 4 T 0.001 0.020 0.003 0.020 0.006 0.936 0.001 0.004 0.001 0.001 0.004 0.004 0.001 0.001 0.001 0.001 5 K 0.001 0.027 0.001 0.020 0.001 0.014 0.001 0.005 0.001 0.001 0.916 0.007 0.003 0.001 0.001 0.001 6 D 0.012 0.142 0.037 0.047 0.001 0.010 0.001 0.003 0.028 0.002 0.007 0.691 0.010 0.001 0.002 0.008 7 M 0.032 0.012 0.602 0.190 0.001 0.008 0.004 0.001 0.002 0.001 0.016 0.013 0.089 0.001 0.003 0.026 8 I 0.001 0.002 0.025 0.009 0.001 0.877 0.001 0.001 0.001 0.001 0.004 0.014 0.065 0.001 0.001 0.001 9 I 0.001 0.006 0.001 0.005 0.002 0.010 0.001 0.001 0.001 0.001 0.884 0.009 0.082 0.001 0.001 0.001 10 A 0.001 0.017 0.001 0.012 0.001 0.003 0.001 0.001 0.001 0.001 0.006 0.767 0.193 0.001 0.001 0.001 11 D 0.001 0.001 0.001 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.003 0.984 0.001 0.001 0.004 12 V 0.001 0.001 0.006 0.003 0.001 0.001 0.002 0.001 0.001 0.001 0.004 0.003 0.973 0.002 0.001 0.003 13 L 0.001 0.002 0.010 0.007 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.009 0.958 0.001 0.004 0.002 14 Q 0.001 0.006 0.011 0.015 0.001 0.007 0.006 0.001 0.001 0.001 0.002 0.004 0.866 0.014 0.002 0.064 15 M 0.024 0.019 0.060 0.041 0.002 0.007 0.015 0.003 0.001 0.001 0.018 0.008 0.670 0.011 0.037 0.084 16 D 0.004 0.005 0.048 0.007 0.019 0.161 0.124 0.001 0.001 0.003 0.009 0.021 0.474 0.104 0.006 0.014 17 R 0.009 0.016 0.009 0.005 0.002 0.020 0.004 0.044 0.001 0.001 0.401 0.012 0.397 0.006 0.070 0.005 18 G 0.002 0.020 0.003 0.005 0.001 0.016 0.002 0.002 0.014 0.010 0.057 0.627 0.207 0.005 0.006 0.023 19 T 0.036 0.009 0.037 0.011 0.001 0.005 0.003 0.001 0.002 0.001 0.034 0.063 0.765 0.001 0.010 0.024 20 A 0.003 0.003 0.089 0.014 0.001 0.009 0.002 0.001 0.001 0.001 0.011 0.040 0.823 0.001 0.001 0.004 21 P 0.002 0.007 0.027 0.042 0.001 0.005 0.001 0.001 0.001 0.001 0.007 0.018 0.889 0.001 0.001 0.001 22 I 0.001 0.003 0.009 0.073 0.001 0.008 0.001 0.001 0.001 0.001 0.002 0.008 0.894 0.001 0.001 0.001 23 F 0.001 0.003 0.006 0.049 0.001 0.003 0.006 0.001 0.001 0.001 0.002 0.001 0.924 0.002 0.001 0.003 24 I 0.001 0.006 0.006 0.027 0.010 0.009 0.006 0.003 0.001 0.001 0.003 0.006 0.905 0.007 0.005 0.005 25 N 0.001 0.001 0.001 0.001 0.045 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.005 0.934 0.001 0.001 26 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.077 0.001 0.001 0.001 0.001 0.005 0.001 0.913 0.001 27 G 0.001 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.131 0.116 0.001 0.003 0.017 0.006 0.004 0.714 28 M 0.963 0.001 0.006 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.013 0.001 0.005 0.002 29 H 0.008 0.099 0.615 0.019 0.005 0.061 0.019 0.006 0.005 0.004 0.011 0.014 0.073 0.003 0.010 0.048 30 C 0.021 0.029 0.042 0.072 0.336 0.100 0.152 0.009 0.003 0.010 0.069 0.024 0.044 0.078 0.002 0.010 31 L 0.018 0.080 0.098 0.145 0.023 0.029 0.028 0.255 0.007 0.004 0.078 0.053 0.041 0.005 0.132 0.005 32 G 0.010 0.076 0.060 0.191 0.003 0.017 0.012 0.009 0.147 0.106 0.015 0.037 0.053 0.001 0.007 0.257 33 C 0.333 0.011 0.066 0.068 0.009 0.240 0.009 0.004 0.012 0.010 0.030 0.057 0.131 0.005 0.003 0.013 34 P 0.018 0.078 0.092 0.043 0.008 0.045 0.008 0.010 0.001 0.001 0.527 0.060 0.091 0.007 0.006 0.005 35 S 0.008 0.140 0.024 0.081 0.008 0.051 0.005 0.014 0.009 0.004 0.036 0.470 0.124 0.002 0.012 0.012 36 S 0.006 0.006 0.050 0.026 0.136 0.033 0.261 0.003 0.003 0.005 0.056 0.041 0.192 0.164 0.003 0.015 37 M 0.014 0.027 0.036 0.024 0.001 0.026 0.005 0.254 0.002 0.001 0.051 0.046 0.209 0.001 0.293 0.008 38 G 0.006 0.030 0.037 0.033 0.002 0.022 0.009 0.001 0.195 0.058 0.030 0.054 0.178 0.003 0.001 0.342 39 E 0.373 0.021 0.171 0.088 0.001 0.007 0.003 0.002 0.001 0.001 0.025 0.051 0.243 0.001 0.003 0.011 40 S 0.001 0.001 0.006 0.001 0.001 0.849 0.001 0.001 0.001 0.001 0.004 0.023 0.114 0.001 0.001 0.001 41 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.951 0.005 0.043 0.001 0.001 0.001 42 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.896 0.100 0.001 0.001 0.001 43 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.002 44 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.985 0.001 0.001 0.009 45 C 0.001 0.001 0.006 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.985 0.001 0.001 0.001 46 A 0.001 0.003 0.005 0.002 0.001 0.004 0.002 0.001 0.001 0.001 0.001 0.006 0.950 0.009 0.003 0.014 47 V 0.001 0.001 0.001 0.001 0.008 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.013 0.953 0.001 0.001 48 H 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.022 0.001 0.952 0.002 49 G 0.002 0.003 0.004 0.001 0.001 0.001 0.002 0.001 0.014 0.007 0.001 0.001 0.012 0.001 0.001 0.952 50 I 0.904 0.005 0.053 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.008 0.001 0.002 0.003 51 D 0.001 0.001 0.004 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.001 0.003 0.007 0.001 0.001 0.001 52 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.004 0.001 0.001 0.001 53 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.992 0.005 0.001 0.001 0.001 54 K 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.982 0.001 0.001 0.005 55 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 56 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.993 0.001 0.001 0.001 57 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 58 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.987 0.001 0.001 0.008 59 L 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.979 0.010 0.001 0.002 60 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 61 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.989 0.001 0.001 0.005 62 Y 0.001 0.003 0.003 0.002 0.001 0.001 0.007 0.001 0.001 0.001 0.002 0.009 0.931 0.017 0.001 0.023 63 F 0.001 0.001 0.059 0.003 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.900 0.003 0.012 0.005 64 E 0.001 0.011 0.028 0.009 0.001 0.024 0.011 0.002 0.001 0.001 0.003 0.012 0.818 0.029 0.008 0.042 65 K 0.031 0.015 0.017 0.029 0.002 0.023 0.017 0.004 0.003 0.001 0.075 0.012 0.625 0.060 0.037 0.048 66 K 0.016 0.051 0.121 0.027 0.001 0.016 0.014 0.004 0.004 0.001 0.037 0.088 0.473 0.014 0.067 0.065 67 E 0.037 0.061 0.119 0.058 0.017 0.034 0.092 0.004 0.005 0.002 0.019 0.035 0.322 0.087 0.015 0.095 68 V 0.048 0.029 0.238 0.120 0.011 0.038 0.094 0.027 0.003 0.001 0.038 0.012 0.226 0.021 0.069 0.025