# TARGET T0473 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0473.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.571 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.004 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.242 0.026 0.151 0.556 2 K 0.011 0.006 0.005 0.001 0.009 0.005 0.003 0.003 0.002 0.003 0.003 0.001 0.003 0.001 0.001 0.001 0.332 0.027 0.093 0.490 3 I 0.012 0.016 0.006 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.002 0.151 0.031 0.146 0.622 4 T 0.617 0.107 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.057 0.026 0.143 5 K 0.171 0.243 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.080 0.093 0.379 6 D 0.023 0.334 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.055 0.056 0.471 7 M 0.022 0.448 0.004 0.001 0.001 0.001 0.001 0.001 0.010 0.004 0.002 0.001 0.001 0.001 0.001 0.001 0.131 0.049 0.066 0.262 8 I 0.026 0.792 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.024 0.038 0.019 0.089 9 I 0.025 0.900 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.020 0.010 0.030 10 A 0.030 0.683 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.109 0.026 0.116 11 D 0.174 0.494 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.129 0.027 0.095 12 V 0.161 0.274 0.031 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.147 0.059 0.240 13 L 0.181 0.061 0.010 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.080 0.071 0.096 0.495 14 Q 0.021 0.038 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.082 0.032 0.084 0.729 15 M 0.018 0.022 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.037 0.114 0.758 16 D 0.230 0.163 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.230 0.057 0.290 17 R 0.075 0.090 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.115 0.106 0.596 18 G 0.028 0.268 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.066 0.063 0.520 19 T 0.020 0.723 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.014 0.040 0.181 20 A 0.029 0.830 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.057 0.015 0.051 21 P 0.024 0.455 0.003 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.021 0.411 0.018 0.057 22 I 0.018 0.204 0.019 0.001 0.002 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.062 0.569 0.027 0.085 23 F 0.035 0.115 0.242 0.001 0.012 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.094 0.353 0.044 0.092 24 I 0.454 0.046 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.085 0.057 0.055 0.284 25 N 0.055 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.031 0.081 0.789 26 N 0.009 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.091 0.026 0.135 0.722 27 G 0.050 0.036 0.005 0.001 0.002 0.003 0.002 0.001 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.127 0.063 0.156 0.548 28 M 0.032 0.016 0.006 0.001 0.003 0.001 0.001 0.001 0.014 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.070 0.056 0.130 0.657 29 H 0.109 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.005 0.002 0.001 0.001 0.225 0.072 0.097 0.461 30 C 0.163 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.008 0.003 0.001 0.048 0.093 0.095 0.569 31 L 0.003 0.005 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.149 0.026 0.192 0.612 32 G 0.006 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.113 0.033 0.137 0.692 33 C 0.053 0.073 0.012 0.001 0.007 0.006 0.003 0.003 0.005 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.080 0.227 0.167 0.356 34 P 0.354 0.118 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.100 0.090 0.293 35 S 0.119 0.064 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.049 0.084 0.644 36 S 0.083 0.057 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.109 0.100 0.598 37 M 0.038 0.213 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.097 0.110 0.517 38 G 0.054 0.496 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.054 0.075 0.302 39 E 0.015 0.643 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 0.091 0.042 0.188 40 S 0.009 0.889 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.027 0.016 0.053 41 I 0.027 0.939 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.005 0.012 42 E 0.016 0.870 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.060 0.010 0.040 43 D 0.022 0.898 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.033 0.007 0.035 44 A 0.056 0.712 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.118 0.023 0.067 45 C 0.150 0.187 0.084 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.321 0.048 0.184 46 A 0.467 0.050 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.029 0.041 0.399 47 V 0.088 0.023 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.058 0.090 0.715 48 H 0.016 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.035 0.035 0.174 0.723 49 G 0.007 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.012 0.086 0.833 50 I 0.006 0.092 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.011 0.098 0.757 51 D 0.054 0.923 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.002 0.012 52 A 0.006 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.004 53 D 0.002 0.921 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.067 0.001 0.008 54 K 0.002 0.980 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.004 55 L 0.003 0.981 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.002 56 V 0.006 0.566 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.417 0.002 0.006 57 K 0.010 0.922 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.004 0.022 58 E 0.003 0.941 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.007 0.023 59 L 0.015 0.889 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.007 0.027 60 N 0.041 0.766 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.069 0.021 0.096 61 E 0.052 0.703 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.022 0.202 62 Y 0.153 0.576 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.049 0.033 0.176 63 F 0.283 0.197 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.166 0.051 0.276 64 E 0.209 0.080 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.063 0.069 0.563 65 K 0.142 0.012 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.058 0.079 0.684 66 K 0.055 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.032 0.110 0.768 67 E 0.018 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.013 0.102 0.828 68 V 0.024 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.015 0.122 0.791