# TARGET T0473 # Using neural net dunbrack-40pc-3157-t2k-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0473.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 19.571 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.032 0.014 0.013 0.004 0.012 0.020 0.005 0.003 0.001 0.001 0.001 0.001 0.005 0.008 0.001 0.002 0.233 0.010 0.097 0.537 2 K 0.010 0.009 0.004 0.001 0.023 0.027 0.008 0.002 0.001 0.002 0.013 0.001 0.037 0.005 0.004 0.004 0.091 0.005 0.076 0.677 3 I 0.007 0.006 0.003 0.001 0.004 0.009 0.004 0.002 0.004 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.143 0.002 0.076 0.731 4 T 0.018 0.013 0.002 0.001 0.001 0.003 0.002 0.001 0.112 0.011 0.009 0.002 0.001 0.001 0.001 0.001 0.120 0.004 0.257 0.442 5 K 0.034 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.006 0.096 0.769 6 D 0.037 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.015 0.316 0.576 7 M 0.507 0.018 0.040 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.052 0.148 0.206 8 I 0.038 0.248 0.002 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.003 0.327 0.336 9 I 0.023 0.270 0.017 0.001 0.059 0.010 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.121 0.015 0.098 0.375 10 A 0.040 0.336 0.005 0.001 0.001 0.005 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.007 0.069 0.487 11 D 0.024 0.522 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.005 0.286 0.144 12 V 0.056 0.853 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.002 0.006 0.007 0.006 0.063 13 L 0.025 0.937 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.008 0.003 0.004 0.017 14 Q 0.139 0.736 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.011 0.005 0.002 0.001 0.013 0.043 0.004 0.041 15 M 0.384 0.388 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.079 0.004 0.120 16 D 0.364 0.290 0.029 0.001 0.001 0.001 0.001 0.001 0.032 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.014 0.050 0.019 0.183 17 R 0.015 0.037 0.011 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.005 0.063 0.860 18 G 0.005 0.016 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.007 0.705 0.258 19 T 0.513 0.015 0.025 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.118 0.126 0.191 20 A 0.087 0.445 0.004 0.003 0.006 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.093 0.005 0.068 0.282 21 P 0.004 0.037 0.006 0.001 0.019 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.025 0.896 22 I 0.033 0.311 0.001 0.001 0.001 0.023 0.006 0.005 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.002 0.072 0.007 0.082 0.449 23 F 0.053 0.718 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.016 0.005 0.001 0.001 0.057 0.007 0.033 0.103 24 I 0.025 0.823 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.002 0.001 0.001 0.001 0.070 0.006 0.010 0.055 25 N 0.025 0.852 0.002 0.001 0.001 0.001 0.001 0.001 0.014 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.019 0.021 0.004 0.058 26 N 0.115 0.598 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.017 0.175 0.002 0.086 27 G 0.380 0.147 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.234 0.017 0.155 28 M 0.018 0.014 0.849 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.012 0.020 0.068 29 H 0.027 0.042 0.011 0.021 0.003 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.203 0.011 0.076 0.596 30 C 0.095 0.026 0.018 0.005 0.022 0.007 0.014 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.072 0.009 0.100 0.615 31 L 0.044 0.032 0.004 0.003 0.002 0.008 0.010 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.180 0.010 0.126 0.561 32 G 0.090 0.037 0.015 0.002 0.002 0.002 0.004 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.140 0.032 0.126 0.541 33 C 0.120 0.035 0.022 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.081 0.010 0.180 0.537 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 35 S 0.030 0.007 0.004 0.001 0.007 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.139 0.006 0.186 0.607 36 S 0.335 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.062 0.010 0.082 0.484 37 M 0.157 0.070 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.007 0.072 0.638 38 G 0.138 0.046 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.068 0.016 0.153 0.569 39 E 0.246 0.064 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.009 0.263 0.363 40 S 0.047 0.122 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.004 0.387 0.419 41 I 0.053 0.310 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.064 0.014 0.081 0.471 42 E 0.012 0.289 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.004 0.216 0.465 43 D 0.016 0.323 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.577 0.078 44 A 0.023 0.956 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 45 C 0.021 0.955 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.002 0.002 0.013 46 A 0.052 0.881 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.014 0.006 0.030 47 V 0.087 0.827 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.029 0.002 0.039 48 H 0.067 0.827 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.053 0.002 0.042 49 G 0.335 0.138 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.043 0.156 0.012 0.284 50 I 0.037 0.013 0.779 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.005 0.046 0.096 51 D 0.016 0.012 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.039 0.004 0.331 0.589 52 A 0.015 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.003 0.076 0.854 53 D 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.577 0.409 54 K 0.050 0.015 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.724 0.206 55 L 0.024 0.886 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.076 56 V 0.003 0.931 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.051 57 K 0.003 0.951 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.041 58 E 0.005 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.021 59 L 0.009 0.977 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.009 60 N 0.014 0.952 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.020 61 E 0.012 0.912 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.003 0.052 62 Y 0.042 0.877 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.002 0.057 63 F 0.040 0.887 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.003 0.045 64 E 0.089 0.680 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.027 0.015 0.162 65 K 0.133 0.573 0.035 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.037 0.008 0.204 66 K 0.145 0.552 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.047 0.013 0.217 67 E 0.170 0.236 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 0.038 0.056 0.443 68 V 0.090 0.173 0.120 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.081 0.018 0.054 0.448