# List of top-scoring protein chains for T0473.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 14.52 a.248.1.1 133507 2q7rA 161 57.05 1y75B 118 69.48 1g0oA 283 78.51 c.2.1.2 60181 1ybvA 283 78.51 c.2.1.2 29948 1c53A 79 81.22 a.3.1.1 15801 2dvhA 79 81.34 a.3.1.1 15803 1e08E 78 82.78 i.4.1.1 45916 1dvhA 79 82.80 a.3.1.1 15802 1owsB 118 89.83 a.133.1.2 87492