# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.007397	a.248.1.1	133507
1txgA	335	7.507	a.100.1.6,c.2.1.6	112775,112776
1e0gA	48	9.718	d.7.1.1	37325
2bkhA	814	12.80		
1y6uA	70	12.91		
1w7jA	795	13.61	b.34.3.1,c.37.1.9	120688,120689
2akaA	776	16.87		
1mvwA	840	19.33	i.15.1.1	79523
1w9iA	770	19.39		
2oa4A	101	19.63		
1ui8A	638	26.75	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1dlwA	116	28.78	a.1.1.1	14982
1yaaA	412	30.04	c.67.1.1	34280
1hdsA	141	32.48	a.1.1.2	15378
2hufA	393	33.17		
1ksiB	642	34.47	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1babA	143	36.37	a.1.1.2	15235
1dghB	498	37.20	e.5.1.1	42791
1br2A	791	39.03	b.34.3.1,c.37.1.9	24558,32155
2ezkA	99	39.69	a.4.1.2	16027
1fe0A	68	39.88	d.58.17.1	39345
1a4fA	141	40.12	a.1.1.2	15394
1m7sA	484	40.87	e.5.1.1	74574
2g9zA	348	42.99		
1cg5A	141	43.04	a.1.1.2	15406
2imfA	203	43.60		
1z67A	135	46.49	a.259.1.1	124507
1x9fA	151	46.54	a.1.1.2	114983
1aj9A	141	46.91	a.1.1.2	15332
2d2mB	142	52.50		
1k6kA	143	56.02	a.174.1.1	77274
1qwlA	505	57.99	e.5.1.1	96483
1pczA	191	58.82	d.129.1.1,d.129.1.1	41292,41293
2j01U	118	59.46		
2iw2A	494	59.55		
2qnuA	226	60.17		
1khyA	148	62.22	a.174.1.1	77410
5eauA	548	63.94	a.102.4.1,a.128.1.3	18851,19443
1dbxA	158	65.12	d.116.1.1	40928
1j7yA	141	66.66	a.1.1.2	66426
2eqpA	50	68.84		
1dgfA	497	69.56	e.5.1.1	42782
1cem	363	71.04		
1kvoA	124	71.41	a.133.1.2	19564
3bomA	142	73.48		
1lvk	762	74.83		
1m85A	484	75.30	e.5.1.1	74578
2v26A	784	76.72		
1d0yA	761	77.10	b.34.3.1,c.37.1.9	24581,32178
1u55A	188	77.23	d.278.1.1	107677
1woyA	500	81.06	a.27.1.1,c.26.1.1	121130,121131
1jf8A	131	81.35	c.44.1.1	66621
1q9iA	571	82.38	a.138.1.3,c.3.1.4,d.168.1.1	96273,96274,96275
1a4eA	488	82.87	e.5.1.1	42806
2z2mA	168	84.63		
2f6mA	65	86.36	a.2.17.1	133051
1wdvA	152	87.25	d.116.1.1	114539
2ghjA	118	89.86