# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.005835 a.248.1.1 133507 1txgA 335 7.100 a.100.1.6,c.2.1.6 112775,112776 2akaA 776 8.365 1w9iA 770 8.372 1w7jA 795 8.566 b.34.3.1,c.37.1.9 120688,120689 2bkhA 814 8.661 1e0gA 48 9.032 d.7.1.1 37325 1mvwA 840 10.70 i.15.1.1 79523 1y6uA 70 11.94 2qnuA 226 15.39 1kvoA 124 22.24 a.133.1.2 19564 2oa4A 101 25.08 1cg5A 141 25.25 a.1.1.2 15406 1hdsA 141 26.25 a.1.1.2 15378 3bomA 142 28.70 1br2A 791 29.01 b.34.3.1,c.37.1.9 24558,32155 1fe0A 68 29.35 d.58.17.1 39345 2oy9A 98 29.84 1dlwA 116 30.76 a.1.1.1 14982 2d2mB 142 31.37 2imfA 203 31.40 1pczA 191 36.66 d.129.1.1,d.129.1.1 41292,41293 1lvk 762 37.96 2j01U 118 38.13 1x9fA 151 38.14 a.1.1.2 114983 1y75B 118 38.32 1ui8A 638 38.42 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1aokB 122 38.55 a.133.1.2 19561 1d0yA 761 39.68 b.34.3.1,c.37.1.9 24581,32178 1dghB 498 40.54 e.5.1.1 42791 1xb4A 202 42.25 a.4.5.54,a.4.5.54 121832,121833 1ae7A 119 42.54 a.133.1.2 19553 1a4fA 141 43.99 a.1.1.2 15394 1ksiB 642 44.92 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1y75A 118 45.03 2ezkA 99 45.30 a.4.1.2 16027 1yaaA 412 47.48 c.67.1.1 34280 2v26A 784 50.93 2ghjA 118 51.43 1aokA 122 52.33 a.133.1.2 19560 1aj9A 141 53.19 a.1.1.2 15332 1hn4A 131 54.04 a.133.1.2 65893 1m7sA 484 55.03 e.5.1.1 74574 1babA 143 58.48 a.1.1.2 15235 2g9zA 348 58.67 1k6kA 143 59.88 a.174.1.1 77274 2fzpA 144 61.06 2aorA 223 62.54 2h8fA 143 63.80 a.1.1.2 136239 1qwlA 505 64.04 e.5.1.1 96483 1p3wA 404 64.49 c.67.1.3 87752 1gyzA 60 65.51 a.144.2.1 70793 1jc4A 148 68.13 d.32.1.4 62863 2h26A 291 69.00 b.1.1.2,d.19.1.1 135990,135991 1g4iA 123 70.07 a.133.1.2 60241 2f6mA 65 70.93 a.2.17.1 133051 1khyA 148 71.11 a.174.1.1 77410 1fehA 574 73.40 c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 2z2mA 168 73.51 1s6bA 119 73.80 a.133.1.2 98592 1jf8A 131 74.97 c.44.1.1 66621 2aa1A 144 75.07 a.1.1.2 126463 1u55A 188 76.82 d.278.1.1 107677 2rn7A 108 77.17 2ezhA 75 77.59 a.4.1.2 16029 1qupA 222 77.82 b.1.8.1,d.58.17.1 22301,39352 1z67A 135 80.48 a.259.1.1 124507 1zlbA 122 83.62 a.133.1.2 125248 2eqpA 50 85.41 1a4eA 488 86.16 e.5.1.1 42806 2g58A 121 86.39 a.133.1.2 134645 1y4lA 121 87.04 a.133.1.2 122624 1n28A 124 87.33 a.133.1.2 91550 2hufA 393 87.46 2ofyA 86 87.58 1dgfA 497 88.61 e.5.1.1 42782 1xxsA 122 88.73