# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000476 a.248.1.1 133507 1e0gA 48 1.256 d.7.1.1 37325 2akaA 776 5.003 1w9iA 770 5.129 2imfA 203 5.456 1w7jA 795 7.160 b.34.3.1,c.37.1.9 120688,120689 2bkhA 814 7.398 1dlwA 116 7.964 a.1.1.1 14982 1mvwA 840 8.448 i.15.1.1 79523 1y6uA 70 9.011 1ksiB 642 12.71 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2oy9A 98 12.81 1txgA 335 14.16 a.100.1.6,c.2.1.6 112775,112776 1y0pA 571 14.84 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1ui8A 638 15.68 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1yaaA 412 16.85 c.67.1.1 34280 1u55A 188 16.93 d.278.1.1 107677 1d0yA 761 18.02 b.34.3.1,c.37.1.9 24581,32178 1lvk 762 18.54 2j01U 118 18.80 1k6kA 143 18.99 a.174.1.1 77274 1yzxA 226 21.29 1br2A 791 21.49 b.34.3.1,c.37.1.9 24558,32155 2ghjA 118 23.03 1wi9A 72 23.72 a.4.5.47 114663 1z67A 135 24.59 a.259.1.1 124507 2gu1A 361 25.47 1dbxA 158 25.52 d.116.1.1 40928 1xb4A 202 30.10 a.4.5.54,a.4.5.54 121832,121833 1pczA 191 30.12 d.129.1.1,d.129.1.1 41292,41293 1wdvA 152 30.37 d.116.1.1 114539 1khyA 148 31.68 a.174.1.1 77410 2v26A 784 32.79 2rn7A 108 33.00 2z2mA 168 33.40 1u3eM 174 34.86 d.4.1.3,d.285.1.1 107640,107641 5eauA 548 35.27 a.102.4.1,a.128.1.3 18851,19443 1neqA 74 36.05 a.35.1.2 17063 1frvA 264 36.34 e.19.1.1 43308 1etxA 98 36.87 a.4.1.12 18978 1qo8A 566 37.23 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2g9zA 348 38.26 2iw2A 494 42.21 1cem 363 43.92 1e3dA 266 45.13 e.19.1.1 59188 2oa4A 101 45.31 2amdA 311 46.71 1ubkS 267 47.42 e.19.1.1 88423 2cobA 70 47.62 a.4.1.15 130673 3cjsB 72 47.70 1ufmA 84 48.18 a.4.5.47 107816 1q2wA 308 48.67 b.47.1.4 88355 1ntcA 91 49.00 a.4.1.12 19004 1knwA 425 49.79 b.49.2.3,c.1.6.1 90969,90970 1x19A 359 50.22 2ewtA 71 51.30 2vl6A 268 51.59 2ofyA 86 53.80 1qwlA 505 53.87 e.5.1.1 96483 1vs3A 249 56.62 1rp3A 239 57.44 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 2al3A 90 57.97 d.15.1.2 126957 153l 185 58.01 2pgdA 482 58.02 a.100.1.1,c.2.1.6 18778,30190 2d2mB 142 58.32 1tc3C 51 58.56 a.4.1.2 16025 1i3jA 116 59.79 d.285.1.1 61594 1zq7A 207 61.01 d.309.1.1 125501 1jc4A 148 62.32 d.32.1.4 62863 1lkxA 697 63.63 c.37.1.9 73981 1jl3A 139 63.77 c.44.1.1 66826 1jf8A 131 63.92 c.44.1.1 66621 3c6fA 153 63.94 1umqA 81 64.14 a.4.1.12 99625 1eu8A 409 64.27 c.94.1.1 59502 1x9fB 145 64.90 a.1.1.2 114984 1l0oC 243 65.68 a.4.13.2 73405 1vajA 214 66.16 d.309.1.1 119907 1fe0A 68 67.13 d.58.17.1 39345 2z99A 219 67.21 1rd5A 262 67.91 c.1.2.4 111772 1lehA 364 68.00 c.2.1.7,c.58.1.1 30268,33916 1gbsA 185 68.92 d.2.1.5 36986 1cmyB 146 69.27 a.1.1.2 15544 1wuiS 267 70.24 e.19.1.1 121290 2amxA 376 70.85 c.1.9.1 127024 2oqeA 660 71.65 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1dghB 498 73.43 e.5.1.1 42791 1lmb3 92 78.55 1m7sA 484 79.86 e.5.1.1 74574 1p4dA 330 81.59 d.89.1.5 94101 2h2zA 306 81.70 2gwdA 449 86.17 2nsaA 170 88.16 2aorA 223 88.85 1dxtB 147 89.11 a.1.1.2 15450 1m85A 484 89.86 e.5.1.1 74578 2ezhA 75 89.92 a.4.1.2 16029