# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.07804	a.248.1.1	133507
1txgA	335	10.01	a.100.1.6,c.2.1.6	112775,112776
1cem	363	29.14		
1dghB	498	29.96	e.5.1.1	42791
1fe0A	68	30.00	d.58.17.1	39345
2hufA	393	30.65		
1dlwA	116	32.17	a.1.1.1	14982
2ezkA	99	34.92	a.4.1.2	16027
1w7jA	795	37.15	b.34.3.1,c.37.1.9	120688,120689
1yaaA	412	38.63	c.67.1.1	34280
1m7sA	484	39.75	e.5.1.1	74574
2akaA	776	40.00		
1cc8A	73	40.15	d.58.17.1	39343
2bkhA	814	40.21		
1e0gA	48	41.98	d.7.1.1	37325
1y6uA	70	43.46		
1qwlA	505	45.18	e.5.1.1	96483
2qnuA	226	46.76		
2oy9A	98	48.19		
1w9iA	770	49.66		
1m85A	484	57.32	e.5.1.1	74578
1hdsA	141	57.90	a.1.1.2	15378
1x9fA	151	58.63	a.1.1.2	114983
1ksiB	642	59.00	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1jf8A	131	63.03	c.44.1.1	66621
1khyA	148	63.46	a.174.1.1	77410
2oa4A	101	66.47		
1mvwA	840	67.08	i.15.1.1	79523
1dgfA	497	68.83	e.5.1.1	42782
1z67A	135	69.18	a.259.1.1	124507
2g9zA	348	70.08		
2ezhA	75	72.29	a.4.1.2	16029
1a4fA	141	76.23	a.1.1.2	15394
2d2mB	142	79.73		
1k6kA	143	80.42	a.174.1.1	77274
1a4eA	488	80.84	e.5.1.1	42806
1babA	143	88.97	a.1.1.2	15235
1cg5A	141	89.64	a.1.1.2	15406