# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.07961	a.248.1.1	133507
1txgA	335	12.08	a.100.1.6,c.2.1.6	112775,112776
1cem	363	21.66		
1fe0A	68	24.90	d.58.17.1	39345
1dghB	498	27.34	e.5.1.1	42791
2bkhA	814	31.00		
2akaA	776	31.49		
2hufA	393	33.88		
1dlwA	116	34.33	a.1.1.1	14982
1cc8A	73	34.36	d.58.17.1	39343
1w7jA	795	34.96	b.34.3.1,c.37.1.9	120688,120689
2ezkA	99	35.22	a.4.1.2	16027
1m7sA	484	37.24	e.5.1.1	74574
1e0gA	48	39.87	d.7.1.1	37325
2oy9A	98	40.78		
1qwlA	505	41.06	e.5.1.1	96483
1y6uA	70	42.78		
1w9iA	770	45.26		
2qnuA	226	46.10		
1yaaA	412	47.96	c.67.1.1	34280
2ezhA	75	52.84	a.4.1.2	16029
1hdsA	141	53.36	a.1.1.2	15378
1z67A	135	57.46	a.259.1.1	124507
1dgfA	497	58.91	e.5.1.1	42782
1m85A	484	59.17	e.5.1.1	74578
1mvwA	840	66.02	i.15.1.1	79523
1khyA	148	67.96	a.174.1.1	77410
1a4eA	488	69.50	e.5.1.1	42806
2oa4A	101	72.70		
1x9fA	151	72.93	a.1.1.2	114983
1k6kA	143	83.19	a.174.1.1	77274
1cg5A	141	85.10	a.1.1.2	15406
1a4fA	141	86.56	a.1.1.2	15394
1qupA	222	86.76	b.1.8.1,d.58.17.1	22301,39352
2as0A	396	87.15	b.122.1.9,c.66.1.51	127227,127228