# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.05705	a.248.1.1	133507
1txgA	335	13.15	a.100.1.6,c.2.1.6	112775,112776
1fe0A	68	18.15	d.58.17.1	39345
1cem	363	22.16		
2hufA	393	24.60		
1dghB	498	26.11	e.5.1.1	42791
1cc8A	73	30.10	d.58.17.1	39343
2bkhA	814	31.82		
1w7jA	795	32.55	b.34.3.1,c.37.1.9	120688,120689
2oy9A	98	32.57		
2ezkA	99	33.04	a.4.1.2	16027
1e0gA	48	33.12	d.7.1.1	37325
2akaA	776	33.16		
1dlwA	116	33.48	a.1.1.1	14982
1y6uA	70	36.61		
2qnuA	226	38.26		
1yaaA	412	41.18	c.67.1.1	34280
1w9iA	770	43.74		
1qwlA	505	44.00	e.5.1.1	96483
1hdsA	141	47.22	a.1.1.2	15378
1m7sA	484	47.98	e.5.1.1	74574
1dgfA	497	54.72	e.5.1.1	42782
2ezhA	75	59.72	a.4.1.2	16029
1x9fA	151	59.72	a.1.1.2	114983
1mvwA	840	61.61	i.15.1.1	79523
1cg5A	141	63.26	a.1.1.2	15406
1a4fA	141	64.08	a.1.1.2	15394
2as0A	396	66.89	b.122.1.9,c.66.1.51	127227,127228
1m85A	484	67.40	e.5.1.1	74578
1khyA	148	68.63	a.174.1.1	77410
1qupA	222	68.68	b.1.8.1,d.58.17.1	22301,39352
1gz5A	456	72.36	c.87.1.6	76406
2oa4A	101	75.70		
1k6kA	143	76.81	a.174.1.1	77274
1babA	143	77.17	a.1.1.2	15235
1ksiB	642	79.92	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1z67A	135	82.60	a.259.1.1	124507
2d2mB	142	84.25		
2eqpA	50	85.13		
1a4eA	488	86.12	e.5.1.1	42806