# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.005290	a.248.1.1	133507
2bkhA	814	7.322		
1w7jA	795	8.056	b.34.3.1,c.37.1.9	120688,120689
1e0gA	48	9.099	d.7.1.1	37325
1w9iA	770	9.225		
2akaA	776	9.568		
1y6uA	70	15.13		
2j01U	118	19.38		
1mvwA	840	20.72	i.15.1.1	79523
2imfA	203	21.09		
1fe0A	68	22.32	d.58.17.1	39345
1etxA	98	26.93	a.4.1.12	18978
2ofyA	86	28.06		
1k6kA	143	30.04	a.174.1.1	77274
1yaaA	412	31.62	c.67.1.1	34280
2qnuA	226	34.42		
1ypyA	184	34.56		
1d0yA	761	39.70	b.34.3.1,c.37.1.9	24581,32178
2ezkA	99	43.56	a.4.1.2	16027
2v26A	784	43.65		
2d2mB	142	45.20		
1khyA	148	46.53	a.174.1.1	77410
1gweA	503	46.98	e.5.1.1	70667
1txgA	335	48.19	a.100.1.6,c.2.1.6	112775,112776
1br2A	791	49.56	b.34.3.1,c.37.1.9	24558,32155
1wi9A	72	51.34	a.4.5.47	114663
2ebnA	289	56.77	c.1.8.5	28990
1hdsA	141	57.44	a.1.1.2	15378
2g9zA	348	60.48		
1lvk	762	61.06		
1babA	143	61.58	a.1.1.2	15235
1huxA	270	61.65	c.55.1.5	61278
1iweA	457	72.53	c.37.1.10	71486
1a4eA	488	74.87	e.5.1.1	42806
1u9lA	70	75.26	a.60.4.2	107751
1lkxA	697	77.37	c.37.1.9	73981
1y0pA	571	77.72	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
2oa4A	101	82.12		
2z2mA	168	85.47