# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03634	a.248.1.1	133507
1txgA	335	5.255	a.100.1.6,c.2.1.6	112775,112776
2bkhA	814	11.39		
2akaA	776	13.09		
1w9iA	770	13.64		
1w7jA	795	16.55	b.34.3.1,c.37.1.9	120688,120689
1yaaA	412	29.15	c.67.1.1	34280
1mvwA	840	29.49	i.15.1.1	79523
1y6uA	70	30.68		
1dghB	498	32.97	e.5.1.1	42791
1br2A	791	35.66	b.34.3.1,c.37.1.9	24558,32155
1dlwA	116	42.74	a.1.1.1	14982
2imfA	203	43.98		
1cem	363	45.68		
1k6kA	143	45.84	a.174.1.1	77274
1e0gA	48	45.95	d.7.1.1	37325
1lvk	762	47.69		
2v26A	784	49.52		
1d0yA	761	51.59	b.34.3.1,c.37.1.9	24581,32178
1ui8A	638	53.85	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
2ofyA	86	54.38		
1m7sA	484	57.26	e.5.1.1	74574
1fe0A	68	58.75	d.58.17.1	39345
1dgfA	497	59.79	e.5.1.1	42782
1z67A	135	64.89	a.259.1.1	124507
2ezkA	99	65.03	a.4.1.2	16027
1qwlA	505	65.92	e.5.1.1	96483
1a4eA	488	66.01	e.5.1.1	42806
2qnuA	226	66.40		
1ksiB	642	66.73	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
5eauA	548	67.91	a.102.4.1,a.128.1.3	18851,19443
2hufA	393	73.90		
1m85A	484	78.54	e.5.1.1	74578
2ezhA	75	81.34	a.4.1.2	16029
1pczA	191	82.26	d.129.1.1,d.129.1.1	41292,41293
2ewtA	71	82.40		
2f6mA	65	82.43	a.2.17.1	133051
2oy9A	98	87.59