# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000941 a.248.1.1 133507 1dghB 498 1.374 e.5.1.1 42791 1yaaA 412 2.464 c.67.1.1 34280 1m7sA 484 2.916 e.5.1.1 74574 1dgfA 497 4.937 e.5.1.1 42782 1jf8A 131 5.923 c.44.1.1 66621 1yxhA 126 7.870 3c0bA 334 7.898 2rfmA 192 8.052 1e0gA 48 8.403 d.7.1.1 37325 1aokA 122 8.942 a.133.1.2 19560 1zxmA 400 8.983 1aokB 122 9.306 a.133.1.2 19561 2iw2A 494 9.449 2zfoB 142 10.18 1xrsA 516 10.83 c.1.19.4 115883 1a2aA 122 10.93 a.133.1.2 19540 1jltB 122 10.96 a.133.1.2 66868 1qycA 308 11.78 c.2.1.2 96581 1y75A 118 12.26 1fcdA 401 13.10 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1o4yA 288 13.43 b.29.1.2 92473 1mc2A 122 13.48 a.133.1.2 74622 1s6bA 119 13.58 a.133.1.2 98592 1a4eA 488 14.03 e.5.1.1 42806 1zunB 434 14.16 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1mb3A 124 14.20 c.23.1.1 78907 1sddA 306 14.91 b.6.1.3,b.6.1.3 105431,105432 2veqA 565 15.11 1rhyA 202 15.90 d.14.1.9,d.14.1.9 97491,97492 1xxsA 122 16.28 2jabA 136 16.33 1ae7A 119 16.96 a.133.1.2 19553 2btoA 473 17.90 1s8iA 121 17.97 a.133.1.2 98735 1qhoA 686 18.82 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1ox6A 555 18.91 c.1.2.1,c.23.16.1 87505,87506 1yxlA 119 19.06 a.133.1.2 124191 1g4iA 123 21.09 a.133.1.2 60241 1peqA 714 21.96 a.98.1.1,c.7.1.2 104131,104132 2pgfA 371 23.02 1s6bB 119 23.44 a.133.1.2 98593 1yzxA 226 24.40 2aqpA 164 25.07 1y75B 118 25.69 2hufA 393 26.06 1m6bA 621 26.22 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 74521,74522,74523,74524 1khyA 148 26.48 a.174.1.1 77410 2qedA 258 28.56 2goyA 275 28.75 1kvoA 124 28.77 a.133.1.2 19564 1bifA 469 29.52 c.37.1.7,c.60.1.4 31961,34003 1dlwA 116 29.87 a.1.1.1 14982 2hbvA 334 32.36 c.1.9.15 136320 1jwhA 337 32.64 d.144.1.7 71913 2pq6A 482 34.04 1fe0A 68 34.22 d.58.17.1 39345 1jc4A 148 34.60 d.32.1.4 62863 1ympA 135 35.16 1y6uA 70 35.44 1etxA 98 38.79 a.4.1.12 18978 1qwlA 505 39.40 e.5.1.1 96483 1z67A 135 39.67 a.259.1.1 124507 1io2A 213 39.70 c.55.3.1 62612 2qnuA 226 40.48 1p3wA 404 41.47 c.67.1.3 87752 1ypyA 184 42.53 2v9kA 530 44.59 1i9aA 182 45.60 d.113.1.2 62082 1u3eM 174 45.97 d.4.1.3,d.285.1.1 107640,107641 2cmdA 312 46.95 c.2.1.5,d.162.1.1 30135,42102 1eg5A 384 48.75 c.67.1.3 34429 2imfA 203 51.76 1sw2A 275 52.77 c.94.1.1 106064 2d2mB 142 56.57 2ofyA 86 57.02 2pnwA 380 57.03 1d3uA 181 57.68 d.129.1.1,d.129.1.1 41290,41291 2d74B 148 57.69 2bdgA 223 58.09 1ecxA 384 58.46 c.67.1.3 34431 2vgeA 229 59.24 1ad1A 266 62.39 c.1.21.1 29668 1cf2O 337 62.63 c.2.1.3,d.81.1.1 29994,39909 1u55A 188 62.68 d.278.1.1 107677 1y4lA 121 63.00 a.133.1.2 122624 1kblA 873 63.52 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2f6mA 65 67.84 a.2.17.1 133051 1v73A 342 67.92 1txgA 335 68.60 a.100.1.6,c.2.1.6 112775,112776 1ohvA 472 69.09 c.67.1.4 93031 1sg1X 161 70.54 g.24.1.1,g.24.1.1,g.24.1.1,g.24.1.1 105515,105516,105517,105518 2amdA 311 70.87 1xl4A 301 71.14 b.1.18.16,f.14.1.1 115430,115431 1n8vA 112 71.74 a.118.21.1 85457 3c5rA 137 72.28 1w9iA 770 72.82 1bunA 120 73.18 a.133.1.2 19614 1rd5A 262 76.01 c.1.2.4 111772 2oy9A 98 76.01 2f8yA 223 76.36 2a1iA 146 76.85 c.52.1.20 125999 2furA 209 77.19 b.45.1.1 134185 1p80A 753 77.62 c.23.16.3,e.5.1.1 94337,94338 2qezA 455 78.67 1w7jA 795 78.70 b.34.3.1,c.37.1.9 120688,120689 1sc6A 404 79.57 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2e84A 556 80.59 2eqpA 50 80.80 1ji1A 637 81.58 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2ezkA 99 82.26 a.4.1.2 16027 1a4fA 141 83.44 a.1.1.2 15394 1e8cA 498 85.08 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1oneA 436 86.09 c.1.11.1,d.54.1.1 29200,38844 2d4zA 250 87.27 d.37.1.1,d.37.1.1 131260,131261 1uby 367 87.41 1vapA 123 88.20 a.133.1.2 19548 1oqsB 122 88.52 a.133.1.2 93428