# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03214	a.248.1.1	133507
1txgA	335	9.475	a.100.1.6,c.2.1.6	112775,112776
2bkhA	814	12.95		
2akaA	776	14.01		
1w9iA	770	16.10		
1w7jA	795	17.38	b.34.3.1,c.37.1.9	120688,120689
1y6uA	70	25.14		
1yaaA	412	25.95	c.67.1.1	34280
1cem	363	33.30		
1br2A	791	33.40	b.34.3.1,c.37.1.9	24558,32155
1e0gA	48	34.99	d.7.1.1	37325
1mvwA	840	35.50	i.15.1.1	79523
1dghB	498	35.95	e.5.1.1	42791
1dlwA	116	39.25	a.1.1.1	14982
2imfA	203	46.24		
1fe0A	68	47.82	d.58.17.1	39345
1k6kA	143	51.80	a.174.1.1	77274
1lvk	762	53.35		
1d0yA	761	55.98	b.34.3.1,c.37.1.9	24581,32178
1m7sA	484	59.29	e.5.1.1	74574
2v26A	784	60.70		
5eauA	548	62.34	a.102.4.1,a.128.1.3	18851,19443
2hufA	393	62.51		
1dgfA	497	62.67	e.5.1.1	42782
2ezkA	99	63.20	a.4.1.2	16027
1aokB	122	65.53	a.133.1.2	19561
1qwlA	505	65.71	e.5.1.1	96483
1a4fA	141	67.83	a.1.1.2	15394
1a4eA	488	68.36	e.5.1.1	42806
1m85A	484	75.22	e.5.1.1	74578
1z67A	135	77.06	a.259.1.1	124507
1kvoA	124	77.27	a.133.1.2	19564
1babA	143	77.41	a.1.1.2	15235
2qnuA	226	78.14		
1hdsA	141	78.78	a.1.1.2	15378
1aokA	122	80.47	a.133.1.2	19560
1ae7A	119	81.89	a.133.1.2	19553
2oa4A	101	82.76		
2ofyA	86	86.55		
2f6mA	65	87.57	a.2.17.1	133051
1etxA	98	88.32	a.4.1.12	18978