# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.03382	a.248.1.1	133507
1txgA	335	12.93	a.100.1.6,c.2.1.6	112775,112776
1hdsA	141	20.28	a.1.1.2	15378
1w7jA	795	20.95	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	22.80		
1fe0A	68	23.19	d.58.17.1	39345
2qnuA	226	24.39		
1y6uA	70	24.70		
1cg5A	141	24.77	a.1.1.2	15406
1mvwA	840	24.92	i.15.1.1	79523
2akaA	776	25.23		
1aokB	122	29.41	a.133.1.2	19561
2bkhA	814	30.05		
2oa4A	101	30.13		
2hufA	393	30.31		
1e0gA	48	31.06	d.7.1.1	37325
1kvoA	124	34.37	a.133.1.2	19564
3bomA	142	42.51		
1a4fA	141	48.66	a.1.1.2	15394
1dlwA	116	48.98	a.1.1.1	14982
1aj9A	141	49.20	a.1.1.2	15332
2fzpA	144	49.29		
1dghB	498	50.15	e.5.1.1	42791
1aokA	122	54.98	a.133.1.2	19560
1ae7A	119	55.58	a.133.1.2	19553
2oy9A	98	55.64		
1ypyA	184	59.83		
1babA	143	59.87	a.1.1.2	15235
2imfA	203	59.91		
1qwlA	505	60.02	e.5.1.1	96483
1xb4A	202	60.78	a.4.5.54,a.4.5.54	121832,121833
1m7sA	484	62.77	e.5.1.1	74574
1br2A	791	64.33	b.34.3.1,c.37.1.9	24558,32155
2eqpA	50	65.33		
2h26A	291	71.57	b.1.1.2,d.19.1.1	135990,135991
1pczA	191	71.91	d.129.1.1,d.129.1.1	41292,41293
2iw2A	494	73.12		
1qupA	222	73.23	b.1.8.1,d.58.17.1	22301,39352
1ksiB	642	73.59	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1yaaA	412	74.02	c.67.1.1	34280
2h8fA	143	74.59	a.1.1.2	136239
2cmdA	312	74.70	c.2.1.5,d.162.1.1	30135,42102
2g9zA	348	75.03		
2ezhA	75	75.82	a.4.1.2	16029
2ogbA	126	78.17		
1x9fA	151	78.44	a.1.1.2	114983
2ezkA	99	78.86	a.4.1.2	16027
1y4lA	121	80.08	a.133.1.2	122624
1cc8A	73	80.66	d.58.17.1	39343
2d2mB	142	81.84		
2j01U	118	84.81		
1oqsB	122	85.43	a.133.1.2	93428
1mc2A	122	85.50	a.133.1.2	74622
1d0yA	761	86.02	b.34.3.1,c.37.1.9	24581,32178
1lvk	762	86.46		
2g58A	121	86.99	a.133.1.2	134645
1y75A	118	87.09		
2gwfB	134	87.51