# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.01453	a.248.1.1	133507
1e0gA	48	9.752	d.7.1.1	37325
1w7jA	795	11.32	b.34.3.1,c.37.1.9	120688,120689
1txgA	335	13.10	a.100.1.6,c.2.1.6	112775,112776
2bkhA	814	15.51		
1w9iA	770	19.58		
1dlwA	116	22.34	a.1.1.1	14982
2akaA	776	22.80		
1mvwA	840	23.17	i.15.1.1	79523
1hdsA	141	23.32	a.1.1.2	15378
1ksiB	642	24.79	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1yaaA	412	27.55	c.67.1.1	34280
1y6uA	70	27.97		
2fzpA	144	28.91		
2imfA	203	34.99		
1fe0A	68	35.66	d.58.17.1	39345
2g9zA	348	36.58		
1br2A	791	37.68	b.34.3.1,c.37.1.9	24558,32155
2oy9A	98	39.50		
1ui8A	638	41.40	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1dghB	498	42.55	e.5.1.1	42791
1aj9A	141	45.84	a.1.1.2	15332
1pczA	191	46.15	d.129.1.1,d.129.1.1	41292,41293
2oa4A	101	46.52		
2ogbA	126	46.65		
2qnuA	226	47.46		
2j01U	118	49.00		
1kvoA	124	49.34	a.133.1.2	19564
2d2mB	142	51.37		
2hufA	393	51.58		
1xb4A	202	51.94	a.4.5.54,a.4.5.54	121832,121833
1q9iA	571	54.58	a.138.1.3,c.3.1.4,d.168.1.1	96273,96274,96275
1cg5A	141	55.56	a.1.1.2	15406
1k6kA	143	59.47	a.174.1.1	77274
1qwlA	505	63.09	e.5.1.1	96483
1m7sA	484	64.21	e.5.1.1	74574
2gwfB	134	64.28		
1jl3A	139	64.37	c.44.1.1	66826
1d0yA	761	65.34	b.34.3.1,c.37.1.9	24581,32178
1lvk	762	65.47		
2ezhA	75	65.90	a.4.1.2	16029
2eqpA	50	66.39		
1jf8A	131	69.61	c.44.1.1	66621
3bomA	142	74.86		
2h26A	291	75.18	b.1.1.2,d.19.1.1	135990,135991
2z2mA	168	75.50		
1aokB	122	75.52	a.133.1.2	19561
2v26A	784	75.72		
2ghjA	118	76.49		
1khyA	148	77.61	a.174.1.1	77410
2iw2A	494	77.89		
1z67A	135	82.15	a.259.1.1	124507
1babA	143	82.17	a.1.1.2	15235
1y4lA	121	83.47	a.133.1.2	122624
2ezkA	99	84.46	a.4.1.2	16027
1x9fB	145	84.47	a.1.1.2	114984
1zmoA	244	85.00		
1dgfA	497	87.56	e.5.1.1	42782
1u55A	188	88.42	d.278.1.1	107677
1a4fA	141	89.34	a.1.1.2	15394