# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.02069	a.248.1.1	133507
1txgA	335	10.80	a.100.1.6,c.2.1.6	112775,112776
1e0gA	48	12.19	d.7.1.1	37325
1fe0A	68	13.54	d.58.17.1	39345
2bkhA	814	14.40		
2akaA	776	15.70		
1w7jA	795	15.82	b.34.3.1,c.37.1.9	120688,120689
1w9iA	770	16.46		
1mvwA	840	18.74	i.15.1.1	79523
1hdsA	141	20.75	a.1.1.2	15378
1y6uA	70	21.72		
2oa4A	101	22.77		
1dlwA	116	28.81	a.1.1.1	14982
1babA	143	35.42	a.1.1.2	15235
1ksiB	642	36.49	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
1cc8A	73	38.37	d.58.17.1	39343
1br2A	791	41.30	b.34.3.1,c.37.1.9	24558,32155
1dghB	498	44.66	e.5.1.1	42791
2j01U	118	45.28		
2ezkA	99	45.49	a.4.1.2	16027
1qupA	222	46.31	b.1.8.1,d.58.17.1	22301,39352
1aj9A	141	48.02	a.1.1.2	15332
2eqpA	50	48.50		
2hufA	393	48.54		
2oy9A	98	50.52		
1cem	363	53.38		
2qnuA	226	54.66		
1cg5A	141	55.42	a.1.1.2	15406
1yaaA	412	56.72	c.67.1.1	34280
3bomA	142	57.19		
1u55A	188	62.73	d.278.1.1	107677
1d0yA	761	63.55	b.34.3.1,c.37.1.9	24581,32178
1xb4A	202	66.35	a.4.5.54,a.4.5.54	121832,121833
5eauA	548	66.58	a.102.4.1,a.128.1.3	18851,19443
2imfA	203	66.59		
2d2mB	142	67.51		
1a4fA	141	67.72	a.1.1.2	15394
1kvoA	124	68.46	a.133.1.2	19564
2ghjA	118	70.82		
1j7yA	141	71.30	a.1.1.2	66426
2g9zA	348	71.38		
1aokB	122	72.91	a.133.1.2	19561
2v26A	784	73.05		
1z67A	135	73.16	a.259.1.1	124507
2iw2A	494	74.47		
2fzpA	144	74.62		
1m7sA	484	75.28	e.5.1.1	74574
1lvk	762	76.46		
1pczA	191	78.05	d.129.1.1,d.129.1.1	41292,41293
1dbxA	158	78.36	d.116.1.1	40928
2rn7A	108	79.06		
1ui8A	638	79.33	b.30.2.1,d.17.2.1,d.17.2.1	99419,99420,99421
1b25A	619	79.49	a.110.1.1,d.152.1.1	19044,41796
2z2mA	168	81.40		
1gyzA	60	88.99	a.144.2.1	70793
1m85A	484	89.16	e.5.1.1	74578