# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.06269	a.248.1.1	133507
1txgA	335	18.29	a.100.1.6,c.2.1.6	112775,112776
1gweA	503	21.25	e.5.1.1	70667
2qnuA	226	22.41		
1ypyA	184	25.20		
1m7sA	484	25.64	e.5.1.1	74574
1aokB	122	29.17	a.133.1.2	19561
1w7jA	795	30.27	b.34.3.1,c.37.1.9	120688,120689
1e0gA	48	30.60	d.7.1.1	37325
1a4eA	488	35.12	e.5.1.1	42806
1lliA	92	38.35	a.35.1.2	17025
1mvwA	840	40.05	i.15.1.1	79523
1m85A	484	40.07	e.5.1.1	74578
2imfA	203	45.16		
1hbzA	498	46.79	e.5.1.1	60937
1y6uA	70	46.89		
1qwlA	505	52.79	e.5.1.1	96483
1w9iA	770	53.22		
1hdsA	141	53.69	a.1.1.2	15378
1zc0A	309	53.96		
1ae7A	119	54.96	a.133.1.2	19553
1kvoA	124	55.03	a.133.1.2	19564
1yaaA	412	56.51	c.67.1.1	34280
2phzA	311	60.53		
1eluA	390	61.86	c.67.1.3	34434
1fe0A	68	62.72	d.58.17.1	39345
1babA	143	67.83	a.1.1.2	15235
2akaA	776	68.97		
2fzpA	144	69.18		
2oa4A	101	69.89		
1elqA	390	70.76	c.67.1.3	34436
1aokA	122	75.26	a.133.1.2	19560
1j7yA	141	77.97	a.1.1.2	66426
2i1qA	322	80.54	a.60.4.1,c.37.1.11	136984,136985
1oqsB	122	81.98	a.133.1.2	93428
1gz5A	456	83.45	c.87.1.6	76406
1y75B	118	84.51		
1jlnA	297	84.86	c.45.1.2	63172
1ksiB	642	85.05	b.30.2.1,d.17.2.1,d.17.2.1	24409,38045,38046
2bkhA	814	85.63		
1y75A	118	88.00		
1a4fA	141	89.35	a.1.1.2	15394
1lmb3	92	89.94