# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fi0A 81 0.000329 a.248.1.1 133507 1jihA 531 2.893 d.240.1.1,e.8.1.7 90374,90375 2eggA 297 3.527 2imfA 203 3.947 2rfmA 192 4.054 1lj1A 571 4.698 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 2ooaA 52 5.164 1jb9A 316 5.746 b.43.4.2,c.25.1.1 62840,62841 1t1dA 100 5.998 d.42.1.2 38637 1y0pA 571 6.024 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2f3nA 76 7.020 a.60.1.2 132885 2jabA 136 8.499 2bkhA 814 9.432 2d2mB 142 10.57 2qnuA 226 13.23 1p2hA 571 14.15 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1m64A 571 15.49 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1n0qA 93 15.62 k.37.1.1 79754 1r9jA 673 15.70 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 2dklA 85 16.74 a.5.2.1 131555 1e0gA 48 17.50 d.7.1.1 37325 2z8aA 146 17.50 1zarA 282 18.19 a.4.5.56,d.144.1.9 124843,124844 3bzhA 194 18.29 1i74A 309 18.51 c.107.1.1 61867 1sctB 151 18.97 a.1.1.2 15003 1qo8A 566 19.96 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2d5cA 263 22.15 1x23A 155 25.22 d.20.1.1 121615 1b0xA 94 25.48 a.60.1.2 17933 1etxA 98 26.31 a.4.1.12 18978 2b5aA 77 26.81 a.35.1.3 127882 1qg0A 308 27.75 b.43.4.2,c.25.1.1 25639,31529 1u9lA 70 28.91 a.60.4.2 107751 1khyA 148 29.21 a.174.1.1 77410 1xzoA 174 29.88 c.47.1.10 122474 1x9fA 151 30.40 a.1.1.2 114983 2d2mC 147 30.40 1ja1A 622 30.42 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1y6uA 70 31.88 1fs7A 485 32.46 a.138.1.3 19691 1b2rA 304 32.53 b.43.4.2,c.25.1.1 25648,31538 1b4fA 82 32.88 a.60.1.2 17934 2v26A 784 33.58 2h56A 233 33.88 1k6kA 143 34.68 a.174.1.1 77274 1ogiA 303 34.88 b.43.4.2,c.25.1.1 92914,92915 2nlyA 245 35.54 c.6.2.7 138364 2b4lA 268 35.75 3bnjA 485 36.04 1l3lA 234 36.93 a.4.6.2,d.110.5.1 73541,73542 1qh0A 295 37.08 b.43.4.2,c.25.1.1 68891,68892 2gu1A 361 37.28 1wr1B 58 37.46 a.5.2.1 121185 2grrA 161 37.51 2gjdA 157 38.01 2yxbA 161 38.75 2r5nA 669 38.80 1x2mA 64 39.82 a.4.1.1 121645 2b5oA 402 40.21 2ofyA 86 40.47 1vekA 84 40.53 a.5.2.1 113636 2bepA 159 40.81 d.20.1.1 128385 3sdhA 146 42.03 a.1.1.2 14984 2hxpA 155 42.18 2bwbA 46 42.85 a.5.2.1 129329 1pscA 365 42.93 c.1.9.3 29058 1b72B 87 43.23 a.4.1.1 16001 2ayvA 166 43.99 d.20.1.1 127572 2d2mA 140 45.21 1zv1A 65 46.81 1u4gA 301 47.95 d.92.1.2 107670 1ks9A 291 48.54 a.100.1.7,c.2.1.6 68857,68858 1trkA 680 49.77 c.36.1.10,c.36.1.6,c.48.1.1 31803,31804,33090 1wzvA 155 50.42 d.20.1.1 121529 1y6lA 149 51.48 d.20.1.1 116509 1ujcA 161 51.67 2nxnB 147 52.22 1u9aA 160 52.91 d.20.1.1 38333 2r7aA 256 53.61 3bs3A 76 53.75 1ig0A 319 54.49 b.82.6.1,c.100.1.1 62354,62355 2j16A 182 54.95 2ef8A 84 55.36 1wi9A 72 56.01 a.4.5.47 114663 1fipA 98 57.03 a.4.1.12 18980 1vg5A 73 57.75 a.5.2.1 113640 1mfqC 129 58.05 a.36.1.1 79046 3bciA 186 58.28 2da7A 71 58.36 1ifyA 49 58.78 a.5.2.1 71207 1go2A 304 59.56 b.43.4.2,c.25.1.1 76243,76244 2esnA 310 59.60 a.4.5.37,c.94.1.1 132333,132334 1dxsA 80 60.17 a.60.1.2 17944 1tueA 212 60.52 c.37.1.20 107323 1fndA 314 61.65 b.43.4.2,c.25.1.1 25626,31516 1vdlA 80 62.06 a.5.2.1 108528 3c86A 328 62.27 1bx1A 314 63.66 b.43.4.2,c.25.1.1 25629,31519 1mvwA 840 66.78 i.15.1.1 79523 1zelA 298 67.15 1qdbA 473 67.41 a.138.1.3 19688 3by5A 155 68.12 1zdnA 158 68.82 d.20.1.1 124943 1x24A 180 69.39 2pg4A 95 69.69 1hkqA 132 70.71 a.4.5.10 83555 1yh2A 175 70.75 d.20.1.1 123158 1o13A 136 71.17 c.55.5.1 80762 2i5uA 83 71.34 2hufA 393 73.77 2awpA 198 73.92 2zc2A 78 74.06 2zfoC 147 74.22 1nytA 271 74.72 c.2.1.7,c.58.1.5 86417,86418 2b0oE 301 76.21 2obpA 96 76.26 2ob3A 330 76.32 1pbjA 125 76.39 d.37.1.1,d.37.1.1 94414,94415 1aipC 196 77.55 a.5.2.2,d.43.1.1 58930,58931 2oo9A 46 78.08 2ib8A 395 78.58 3cpkA 150 79.07 1i0dA 332 79.51 c.1.9.3 61487 2cw6A 298 79.75 2d2jA 329 80.07 c.1.9.3 131175 1nnlA 225 81.35 c.108.1.4 85906 1ccwA 137 81.70 c.23.6.1 31238 1vejA 74 81.81 a.5.2.1 120020 3c57A 95 82.01 1l1eA 287 82.08 c.66.1.18 73454 1v38A 78 82.58 a.60.1.2 100280 1mzhA 225 82.61 c.1.10.1 79698 1g3qA 237 82.80 c.37.1.10 60237 2ew2A 316 83.59 1wdkC 390 84.56 c.95.1.1,c.95.1.1 109258,109259 2e8oA 103 85.12 1p77A 272 85.13 c.2.1.7,c.58.1.5 94214,94215 2j01U 118 85.21 1dj8A 89 86.92 a.57.1.1 17919 1m3kA 392 87.04 c.95.1.1,c.95.1.1 78565,78566 1l0oC 243 88.13 a.4.13.2 73405 1m4tA 392 89.17 c.95.1.1,c.95.1.1 78617,78618 3bs7A 78 89.51 1eywA 331 89.71 c.1.9.3 29057 2p0lA 288 89.75