# TARGET T0473 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment T0473.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.2886 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.204 0.014 0.201 0.485 0.003 0.019 0.008 0.001 0.007 0.007 0.007 0.008 0.014 0.001 0.001 0.021 2 K 0.048 0.039 0.302 0.483 0.010 0.091 0.003 0.002 0.002 0.001 0.004 0.004 0.007 0.001 0.001 0.004 3 I 0.008 0.034 0.041 0.636 0.060 0.124 0.008 0.006 0.001 0.003 0.055 0.008 0.009 0.004 0.001 0.002 4 T 0.003 0.212 0.014 0.112 0.017 0.460 0.004 0.032 0.005 0.004 0.024 0.087 0.019 0.001 0.006 0.001 5 K 0.002 0.015 0.006 0.032 0.002 0.084 0.002 0.015 0.011 0.007 0.759 0.021 0.036 0.001 0.002 0.006 6 D 0.019 0.592 0.074 0.045 0.001 0.002 0.002 0.001 0.011 0.001 0.004 0.214 0.014 0.001 0.008 0.012 7 M 0.041 0.007 0.549 0.290 0.001 0.005 0.001 0.001 0.001 0.002 0.003 0.004 0.052 0.001 0.003 0.041 8 I 0.004 0.001 0.064 0.011 0.004 0.871 0.001 0.001 0.001 0.001 0.004 0.002 0.036 0.001 0.001 0.001 9 I 0.001 0.014 0.001 0.004 0.001 0.133 0.001 0.002 0.001 0.001 0.791 0.009 0.045 0.001 0.001 0.001 10 A 0.001 0.028 0.001 0.010 0.001 0.001 0.001 0.001 0.002 0.001 0.007 0.914 0.034 0.001 0.001 0.001 11 D 0.001 0.001 0.002 0.004 0.001 0.004 0.001 0.001 0.001 0.001 0.004 0.007 0.975 0.001 0.001 0.002 12 V 0.001 0.003 0.031 0.004 0.001 0.005 0.012 0.001 0.001 0.001 0.009 0.009 0.906 0.006 0.001 0.013 13 L 0.002 0.008 0.020 0.038 0.001 0.003 0.012 0.002 0.001 0.001 0.005 0.027 0.851 0.006 0.019 0.006 14 Q 0.002 0.007 0.039 0.026 0.006 0.021 0.043 0.001 0.002 0.001 0.002 0.002 0.607 0.072 0.008 0.162 15 M 0.031 0.104 0.230 0.150 0.002 0.006 0.014 0.012 0.002 0.001 0.012 0.005 0.242 0.010 0.084 0.096 16 D 0.008 0.006 0.067 0.009 0.034 0.390 0.141 0.002 0.002 0.016 0.011 0.019 0.231 0.029 0.005 0.031 17 R 0.013 0.039 0.012 0.005 0.001 0.041 0.002 0.033 0.001 0.001 0.657 0.016 0.159 0.002 0.015 0.004 18 G 0.003 0.086 0.006 0.012 0.001 0.010 0.001 0.001 0.035 0.006 0.026 0.734 0.061 0.001 0.002 0.017 19 T 0.100 0.026 0.152 0.049 0.001 0.007 0.004 0.001 0.001 0.001 0.020 0.074 0.541 0.001 0.005 0.019 20 A 0.007 0.003 0.394 0.048 0.001 0.063 0.002 0.001 0.001 0.001 0.040 0.034 0.402 0.001 0.001 0.004 21 P 0.001 0.044 0.023 0.152 0.001 0.032 0.001 0.001 0.001 0.001 0.042 0.034 0.668 0.001 0.001 0.001 22 I 0.001 0.023 0.002 0.279 0.001 0.052 0.002 0.001 0.001 0.001 0.004 0.056 0.581 0.001 0.001 0.001 23 F 0.001 0.011 0.022 0.225 0.006 0.019 0.014 0.001 0.001 0.001 0.004 0.010 0.678 0.003 0.002 0.006 24 I 0.001 0.012 0.024 0.094 0.023 0.038 0.009 0.005 0.001 0.001 0.012 0.007 0.752 0.008 0.006 0.008 25 N 0.001 0.001 0.002 0.004 0.076 0.002 0.036 0.001 0.001 0.001 0.003 0.001 0.015 0.853 0.001 0.003 26 N 0.001 0.004 0.004 0.004 0.001 0.001 0.003 0.118 0.001 0.001 0.002 0.002 0.023 0.001 0.834 0.002 27 G 0.003 0.006 0.010 0.005 0.004 0.003 0.015 0.002 0.139 0.092 0.007 0.003 0.036 0.018 0.003 0.655 28 M 0.888 0.007 0.012 0.014 0.003 0.003 0.007 0.008 0.002 0.001 0.006 0.014 0.019 0.002 0.010 0.004 29 H 0.018 0.084 0.403 0.065 0.009 0.111 0.010 0.023 0.026 0.032 0.017 0.039 0.090 0.005 0.018 0.051 30 C 0.044 0.018 0.026 0.062 0.295 0.107 0.179 0.005 0.007 0.012 0.084 0.031 0.049 0.069 0.003 0.009 31 L 0.013 0.096 0.058 0.085 0.007 0.021 0.004 0.411 0.008 0.002 0.072 0.063 0.038 0.003 0.115 0.005 32 G 0.008 0.049 0.072 0.150 0.004 0.010 0.007 0.005 0.270 0.119 0.007 0.041 0.041 0.004 0.004 0.209 33 C 0.412 0.013 0.091 0.090 0.023 0.129 0.047 0.004 0.004 0.006 0.015 0.038 0.113 0.004 0.005 0.006 34 P 0.010 0.069 0.151 0.059 0.013 0.175 0.011 0.046 0.003 0.005 0.281 0.036 0.115 0.005 0.008 0.012 35 S 0.017 0.109 0.029 0.201 0.012 0.032 0.005 0.011 0.036 0.010 0.090 0.338 0.081 0.007 0.008 0.015 36 S 0.037 0.024 0.083 0.088 0.099 0.073 0.150 0.005 0.008 0.007 0.033 0.109 0.191 0.065 0.009 0.020 37 M 0.014 0.059 0.122 0.064 0.001 0.047 0.005 0.184 0.003 0.003 0.084 0.050 0.210 0.001 0.137 0.018 38 G 0.018 0.052 0.042 0.081 0.003 0.094 0.007 0.002 0.095 0.038 0.084 0.079 0.259 0.003 0.002 0.141 39 E 0.215 0.112 0.118 0.230 0.001 0.006 0.001 0.003 0.001 0.001 0.026 0.098 0.179 0.001 0.005 0.004 40 S 0.001 0.001 0.002 0.002 0.001 0.876 0.001 0.001 0.001 0.001 0.001 0.016 0.100 0.001 0.001 0.001 41 I 0.001 0.001 0.001 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.801 0.005 0.180 0.001 0.001 0.001 42 E 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.899 0.092 0.001 0.001 0.001 43 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.002 44 A 0.001 0.001 0.005 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.002 0.983 0.001 0.001 0.003 45 C 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.002 46 A 0.001 0.001 0.004 0.005 0.001 0.003 0.006 0.001 0.001 0.001 0.002 0.004 0.944 0.016 0.001 0.011 47 V 0.001 0.001 0.001 0.001 0.004 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.015 0.941 0.002 0.002 48 H 0.001 0.001 0.007 0.001 0.001 0.001 0.003 0.019 0.001 0.001 0.001 0.001 0.012 0.001 0.952 0.003 49 G 0.003 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.026 0.009 0.001 0.001 0.011 0.001 0.001 0.938 50 I 0.931 0.008 0.036 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.001 51 D 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 52 A 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.996 0.001 0.002 0.001 0.001 0.001 53 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 54 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 55 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 56 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 57 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 58 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.982 0.012 0.001 0.006 59 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.991 0.002 0.004 0.001 60 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 61 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.983 0.007 0.001 0.005 62 Y 0.001 0.001 0.002 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.003 0.947 0.022 0.007 0.012 63 F 0.001 0.001 0.013 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.002 0.002 0.949 0.003 0.012 0.008 64 E 0.002 0.004 0.015 0.002 0.001 0.003 0.013 0.001 0.001 0.001 0.004 0.005 0.864 0.039 0.009 0.038 65 K 0.010 0.012 0.035 0.009 0.001 0.009 0.027 0.003 0.001 0.001 0.020 0.008 0.718 0.047 0.057 0.045 66 K 0.008 0.027 0.152 0.013 0.001 0.014 0.033 0.003 0.002 0.001 0.025 0.019 0.548 0.017 0.051 0.085 67 E 0.032 0.025 0.093 0.020 0.018 0.057 0.121 0.004 0.003 0.003 0.038 0.044 0.397 0.080 0.014 0.049 68 V 0.025 0.129 0.121 0.035 0.013 0.037 0.068 0.041 0.003 0.002 0.080 0.047 0.230 0.049 0.089 0.032