# TARGET T0473 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-o_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 o_sep ) # The input amino acid frequencies were determined from # alignment T0473.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.2886 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.007 0.010 0.001 0.001 0.001 0.002 0.002 0.001 0.006 0.005 0.007 0.001 0.002 0.001 0.003 0.001 0.235 0.057 0.114 0.544 2 K 0.015 0.022 0.005 0.001 0.028 0.011 0.013 0.003 0.003 0.007 0.006 0.001 0.004 0.005 0.003 0.001 0.111 0.047 0.113 0.601 3 I 0.008 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.132 0.019 0.125 0.676 4 T 0.467 0.390 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.074 0.010 0.052 5 K 0.096 0.640 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.024 0.033 0.195 6 D 0.007 0.676 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.014 0.035 0.249 7 M 0.036 0.694 0.003 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.053 0.052 0.037 0.113 8 I 0.032 0.908 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.024 0.005 0.019 9 I 0.049 0.897 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.012 0.006 0.029 10 A 0.016 0.849 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.033 0.009 0.077 11 D 0.096 0.711 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.080 0.014 0.066 12 V 0.198 0.424 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.147 0.036 0.130 13 L 0.299 0.086 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.021 0.063 0.079 0.439 14 Q 0.019 0.040 0.010 0.001 0.007 0.007 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.037 0.099 0.742 15 M 0.012 0.016 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.102 0.162 0.674 16 D 0.478 0.058 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.275 0.042 0.134 17 R 0.082 0.037 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.030 0.133 0.707 18 G 0.004 0.085 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.020 0.151 0.710 19 T 0.029 0.515 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.038 0.042 0.076 0.294 20 A 0.038 0.820 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.022 0.014 0.079 21 P 0.046 0.465 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.002 0.001 0.001 0.001 0.046 0.311 0.024 0.092 22 I 0.036 0.209 0.026 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.014 0.003 0.002 0.123 0.376 0.050 0.149 23 F 0.046 0.043 0.317 0.002 0.010 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.054 0.420 0.028 0.074 24 I 0.408 0.015 0.009 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.113 0.036 0.059 0.350 25 N 0.043 0.008 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.027 0.076 0.797 26 N 0.008 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.015 0.141 0.770 27 G 0.051 0.019 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.088 0.160 0.626 28 M 0.031 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.022 0.004 0.005 0.001 0.001 0.001 0.001 0.001 0.047 0.056 0.110 0.710 29 H 0.053 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.214 0.056 0.135 0.517 30 C 0.057 0.020 0.002 0.001 0.001 0.002 0.002 0.001 0.001 0.001 0.002 0.001 0.006 0.004 0.005 0.002 0.139 0.092 0.133 0.529 31 L 0.017 0.017 0.001 0.001 0.003 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.002 0.176 0.053 0.144 0.568 32 G 0.025 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.137 0.089 0.130 0.574 33 C 0.117 0.218 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.199 0.108 0.279 34 P 0.072 0.134 0.011 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.052 0.091 0.127 0.504 35 S 0.243 0.198 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.037 0.051 0.072 0.394 36 S 0.331 0.111 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.137 0.091 0.285 37 M 0.024 0.268 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.083 0.094 0.120 0.403 38 G 0.027 0.442 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.025 0.031 0.087 0.378 39 E 0.012 0.491 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.084 0.055 0.067 0.281 40 S 0.019 0.954 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.002 0.010 41 I 0.034 0.944 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.003 0.012 42 E 0.004 0.958 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.004 0.022 43 D 0.057 0.875 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.024 0.006 0.027 44 A 0.064 0.603 0.038 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.144 0.035 0.090 45 C 0.135 0.076 0.257 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.296 0.040 0.167 46 A 0.370 0.038 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.045 0.024 0.066 0.447 47 V 0.166 0.013 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.059 0.037 0.079 0.638 48 H 0.028 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.020 0.124 0.791 49 G 0.003 0.007 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.007 0.118 0.849 50 I 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.051 0.012 0.224 0.697 51 D 0.109 0.794 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.079 0.002 0.015 52 A 0.043 0.937 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.008 53 D 0.007 0.924 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.034 0.002 0.031 54 K 0.009 0.890 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.063 0.003 0.033 55 L 0.002 0.943 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.041 0.004 0.009 56 V 0.003 0.356 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.628 0.003 0.010 57 K 0.011 0.880 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.070 0.003 0.035 58 E 0.011 0.894 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.042 0.006 0.044 59 L 0.007 0.904 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.005 0.021 60 N 0.028 0.861 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.011 0.053 61 E 0.043 0.720 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.040 0.011 0.182 62 Y 0.105 0.534 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.175 0.026 0.127 63 F 0.359 0.167 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.169 0.058 0.207 64 E 0.143 0.033 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.036 0.065 0.713 65 K 0.074 0.012 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.015 0.025 0.053 0.820 66 K 0.051 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.028 0.108 0.778 67 E 0.018 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.023 0.016 0.116 0.822 68 V 0.027 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.025 0.104 0.774