# TARGET T0473 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0473.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23.2886 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.080 0.013 0.007 0.002 0.003 0.001 0.003 0.002 0.001 0.001 0.001 0.002 0.003 0.011 0.004 0.003 0.079 0.017 0.078 0.688 2 K 0.015 0.009 0.003 0.002 0.007 0.002 0.003 0.003 0.001 0.002 0.009 0.003 0.050 0.036 0.025 0.006 0.072 0.007 0.101 0.645 3 I 0.010 0.007 0.004 0.002 0.004 0.002 0.003 0.001 0.003 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.161 0.002 0.049 0.740 4 T 0.013 0.036 0.001 0.001 0.002 0.006 0.004 0.003 0.234 0.069 0.006 0.002 0.002 0.001 0.001 0.002 0.264 0.005 0.104 0.245 5 K 0.030 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.005 0.052 0.844 6 D 0.023 0.019 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.009 0.267 0.629 7 M 0.654 0.014 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.047 0.083 0.052 0.142 8 I 0.035 0.115 0.009 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.144 0.008 0.368 0.314 9 I 0.010 0.047 0.022 0.001 0.149 0.010 0.007 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.233 0.006 0.078 0.432 10 A 0.010 0.175 0.003 0.001 0.003 0.082 0.022 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.241 0.006 0.118 0.330 11 D 0.047 0.241 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.091 0.012 0.100 0.499 12 V 0.067 0.670 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.072 0.005 0.018 0.160 13 L 0.054 0.759 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.078 0.006 0.026 0.068 14 Q 0.122 0.648 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.007 0.005 0.002 0.039 0.030 0.013 0.118 15 M 0.132 0.488 0.012 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.033 0.085 0.008 0.230 16 D 0.140 0.411 0.019 0.001 0.001 0.001 0.001 0.001 0.012 0.010 0.002 0.001 0.001 0.001 0.001 0.001 0.018 0.077 0.019 0.285 17 R 0.015 0.028 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.013 0.028 0.880 18 G 0.020 0.018 0.013 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.032 0.008 0.376 0.530 19 T 0.367 0.020 0.016 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.018 0.038 0.230 0.308 20 A 0.154 0.190 0.018 0.003 0.005 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.168 0.014 0.069 0.370 21 P 0.001 0.005 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.015 0.968 22 I 0.032 0.056 0.005 0.001 0.004 0.015 0.009 0.005 0.001 0.001 0.001 0.001 0.004 0.005 0.003 0.003 0.184 0.006 0.033 0.634 23 F 0.092 0.306 0.002 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.006 0.001 0.026 0.009 0.002 0.002 0.219 0.008 0.037 0.282 24 I 0.050 0.360 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.010 0.002 0.001 0.005 0.003 0.001 0.002 0.430 0.005 0.028 0.094 25 N 0.040 0.577 0.002 0.001 0.001 0.001 0.001 0.001 0.037 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.165 0.016 0.030 0.122 26 N 0.153 0.411 0.003 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.090 0.148 0.018 0.172 27 G 0.318 0.055 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.083 0.192 0.061 0.272 28 M 0.055 0.012 0.636 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.024 0.008 0.074 0.186 29 H 0.028 0.016 0.008 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.326 0.013 0.163 0.431 30 C 0.047 0.016 0.009 0.004 0.014 0.005 0.006 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.070 0.008 0.062 0.749 31 L 0.049 0.021 0.009 0.002 0.003 0.005 0.014 0.005 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.367 0.007 0.094 0.415 32 G 0.046 0.014 0.005 0.001 0.001 0.001 0.003 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.100 0.008 0.206 0.606 33 C 0.122 0.019 0.007 0.001 0.001 0.001 0.002 0.002 0.003 0.001 0.003 0.001 0.001 0.001 0.001 0.002 0.164 0.006 0.092 0.567 34 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.006 0.988 35 S 0.056 0.021 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.092 0.006 0.116 0.696 36 S 0.211 0.119 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.073 0.011 0.093 0.487 37 M 0.274 0.214 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.086 0.010 0.054 0.349 38 G 0.126 0.179 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.017 0.103 0.495 39 E 0.166 0.160 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.056 0.020 0.122 0.458 40 S 0.033 0.134 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.009 0.113 0.689 41 I 0.051 0.388 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.049 0.004 0.048 0.451 42 E 0.005 0.424 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.131 0.426 43 D 0.046 0.363 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.016 0.341 0.227 44 A 0.014 0.967 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 45 C 0.010 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.007 46 A 0.021 0.957 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.002 0.011 47 V 0.044 0.892 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.031 0.001 0.024 48 H 0.078 0.819 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.065 0.001 0.029 49 G 0.409 0.174 0.076 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.145 0.013 0.174 50 I 0.058 0.006 0.863 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.020 0.044 51 D 0.021 0.012 0.023 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.003 0.227 0.699 52 A 0.035 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.002 0.044 0.854 53 D 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.201 0.782 54 K 0.032 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.849 0.107 55 L 0.010 0.931 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.055 56 V 0.013 0.940 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.043 57 K 0.008 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.029 58 E 0.013 0.945 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.035 59 L 0.017 0.959 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.014 60 N 0.017 0.944 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.003 0.027 61 E 0.017 0.870 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.014 0.005 0.088 62 Y 0.055 0.777 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.019 0.015 0.130 63 F 0.059 0.790 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.009 0.030 0.102 64 E 0.037 0.805 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.012 0.015 0.114 65 K 0.120 0.691 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.035 0.009 0.136 66 K 0.243 0.546 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.049 0.009 0.137 67 E 0.139 0.363 0.096 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.022 0.035 0.052 0.287 68 V 0.072 0.208 0.052 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.024 0.066 0.497