# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fi0A	81	0.06139	a.248.1.1	133507
1y6uA	70	5.518		
1u3eM	174	9.653	d.4.1.3,d.285.1.1	107640,107641
1w9iA	770	9.845		
2v26A	784	14.29		
1w7jA	795	14.57	b.34.3.1,c.37.1.9	120688,120689
2oap1	511	18.32		
1gbs	185	19.01		
2bkhA	814	26.34		
2z99A	219	34.27		
1jpyA	137	34.29	g.17.1.6	67065
1dgfA	497	34.44	e.5.1.1	42782
1m85A	484	34.85	e.5.1.1	74578
1gbsA	185	35.29	d.2.1.5	36986
1pq7A	224	36.16	b.47.1.2	95002
2oa4A	101	36.30		
2al3A	90	37.50	d.15.1.2	126957
1xb4A	202	38.26	a.4.5.54,a.4.5.54	121832,121833
1rp3A	239	38.52	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680
2feaA	236	41.42	c.108.1.20	133327
2cobA	70	46.05	a.4.1.15	130673
3c8yA	574	48.51		
1fe0A	68	50.62	d.58.17.1	39345
1ubkS	267	51.67	e.19.1.1	88423
2hinA	71	54.69		
2zfoB	142	57.71		
1tw3A	360	57.88	a.4.5.29,c.66.1.12	107373,107374
2j01U	118	58.28		
5eau	548	58.48		
1x9fA	151	60.20	a.1.1.2	114983
1m7sA	484	60.67	e.5.1.1	74574
2cx5A	158	61.09		
1m1qA	91	61.47	a.138.1.3	74419
1qw1A	121	61.86		
2uwxA	494	66.58	e.3.1.1	140002
1zupA	315	70.26	c.55.3.11	125681
1wdvA	152	71.47	d.116.1.1	114539
1ul7A	102	72.18	d.129.6.1	99540
1x9fB	145	73.20	a.1.1.2	114984
2ouwA	138	73.64		
1aorA	605	75.67	a.110.1.1,d.152.1.1	19042,41794
1k6kA	143	76.63	a.174.1.1	77274
2zfoC	147	77.33		
2z0xA	158	78.02		
2gwfB	134	79.14		
2pgfA	371	79.56		
1kfrA	147	81.39	a.1.1.2	72424
2d5rB	116	82.80		
2f6mA	65	84.39	a.2.17.1	133051
1fipA	98	87.24	a.4.1.12	18980
1fehA	574	87.30	c.96.1.1,d.15.4.2,d.58.1.5	36015,37690,38998
1cg5A	141	89.95	a.1.1.2	15406